l-Methionine repressible promoters for tuneable gene expression in Trichoderma reesei

Bischof, Robert H.; Horejs, Jennifer; Metz, Benjamin; Gamauf, Christian; Kubicek, Christian P; Seiboth, Bernhard

doi:10.1186/s12934-015-0308-3

Microbial Cell Factories

Table 1 l-Methionine regulated genes of wheat straw grown T. reesei QM9414 cultures

From: l-Methionine repressible promoters for tuneable gene expression in Trichoderma reesei

Gene ID	Fold change		Log2 gene expression from array data		Functional annotation
Gene ID	Fold change		Met−	Met+	Functional annotation
112567	20.02	Down	12.49	8.16	Taurine catabolism dioxygenase TauD/TfdA^a
6005	11.61	Down	11.55	8.01	MSF permease, allantoin-permease like^c
54461	8.98	Down	10.09	6.92	MSF permease^c
73250	8.76	Down	10.30	7.16	Urea transporter/Na⁺-amino acid transporter^c
59876	8.61	Down	12.02	8.91	DszA-type family xenobiotic monooxygenases^a
104081	8.55	Down	10.63	7.53	DszA-type family xenobiotic monooxygenases^a
60144	8.54	Down	10.54	7.45	Amino acid transporter, high affinity methionine transporter^c
69563	8.08	Down	9.79	6.77	MSF permease^c
123979	6.61	Down	12.75	10.03	Taurine catabolism dioxygenase TauD/TfdA^a
5369	5.83	Down	9.40	6.86	Metallocarboxypeptidase, putative
59333	5.61	Down	9.12	6.63	MSF permease, allantoin permease like^c
56911	5.59	Down	9.89	7.41	Urea transporter/Na⁺ amino acid transporter^c
103039	5.06	Down	11.34	9.00	Peptidase S41
81576	5.04	Down	13.64	11.31	Assimilatory sulfite reductase, alpha subunit^b
103012	4.75	Down	12.35	10.10	Taurine catabolism dioxygenase TauD/TfdA^a
64049	4.48	Down	10.47	8.31	Unknown protein
62872	3.88	Down	14.05	12.10	Unknown protein GPR1/FUN34/yaaH-like
68831	3.81	Down	10.63	8.70	Amino acid transporter^c
65410	2.95	Down	13.51	11.95	Phosphoadenosine phosphosulfate reductase^b
124115	2.93	Down	13.34	11.79	Phosphoenolpyruvate carboxykinase AcuF
22110	2.79	Down	11.54	10.06	Flavin-containing monooxygenase^a
53964	2.56	Down	8.68	7.33	Oxalate decarboxylase^a
109239	2.56	Down	9.31	7.95	Unknown protein
108781	2.48	Down	10.93	9.62	DszA-type family xenobiotic monooxygenases
121139	2.39	Down	11.10	9.84	Amino acid transporter, AAT-family^c
79741	2.38	Down	13.11	11.86	Sulfat transporter SUL1^b
69696	2.36	Down	10.18	8.94	DszA-type family xenobiotic monooxygenases^a
111912	2.35	Down	9.36	8.14	Carbonic anhydrase
120473	2.32	Down	11.41	10.19	Dihydrolipoamide transacylase
54219	2.28	Down	14.81	13.61	CE5 acetyl xylan esterase
112590	2.26	Down	9.26	8.09	Siderophore biosynthesis lipase/esterase^a
102820	2.18	Down	11.17	10.04	Ferrooxidoreductase^a
71005	2.16	Down	8.35	7.24	NRPS siderophore synthase SID1^a
66517	2.11	Down	12.63	11.55	Homoserine O-acetyltransferase^b
120864	2.16	Up	10.76	11.88	DIP2, encoding a nucleolar protein
4109	2.26	Up	10.68	11.85	Aspartate/tyrosine/aromatic aminotransferase
78650	2.21	Up	11.92	13.06	C2H2 transcriptional regulator
56587	2.44	Up	8.81	10.10	GCN5-related N-acetyltransferase
41590	2.09	Up	11.58	12.64	Iron transporter^a
3049	3.46	Up	11.76	13.55	Methionine aminopeptidase
66854	3.14	Up	7.57	9.22	Monocarboxylate transporter
60052	2.25	Up	8.15	9.32	Short chain dehydrogenase/reductase
67840	2.06	Up	10.62	11.66	Shows similarity to S. cerevisiae Utp11
110767	2.31	Up	9.70	10.91	Unique protein
120975	3.17	Up	9.57	11.23	Unknown protein
110768	2.44	Up	10.77	12.06	Unknown protein
77593	2.15	Up	9.11	10.21	Unknown protein
56048	3.60	Up	8.96	10.81	Unknown protein
55172	2.06	Up	10.00	11.05	Unknown protein
106043	2.87	Up	9.02	10.55	Unknown protein, GFA-domain
43397	3.33	Up	9.62	11.35	Unknown protein, secreted, only in hypocreaceae, HTG
57494	2.05	Up	9.98	11.00	UTP10, encoding a component of the SSU processome

^aIron related proteins.
^bSulfur metabolism related proteins.
^cTransport proteins.

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ISSN: 1475-2859

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