Strain/plasmid | Description | References |
---|---|---|
Escherichia coli strains | ||
BW25113 | Wild type K-12 strain | Our lab |
DH5αa | For genetic manipulation | Invitrogen |
TX | PT5-dxs K-12 strain, for construction of strains that harboring PT5-dxs phenotype | This study |
TI | PT5-idi K-12 strain, for construction of strains that harboring PT5-idi phenotype | This study |
GRK | galR::P119-glk K-12 strain, for construction of strains that harboring galR::P119-glk phenotype | This study |
W036 | BW25113, pLY036 plasmid | This study |
P036 | Δpgi, pLY036 plasmid | This study, KEIO |
KA036 | ΔpfkA, pLY036 plasmid | This study, KEIO |
KB036 | ΔpfkB, pLY036 plasmid | This study, KEIO |
KAB036 | ΔpfkAΔpfkB, pLY036 plasmid | This study |
F036 | ΔfbaB, pLY036 plasmid | This study, KEIO |
W-AZ036 | BW25113, pBAD-zwf and pLY036 plasmids | This study |
W-AE036 | BW25113, pBAD-eda and pLY036 plasmids | This study |
W-AD036 | BW25113, pBAD-edd and pLY036 plasmids | This study |
TX036 | PT5-dxs, pLY036 plasmid | This study |
PTX036 | ΔpgiPT5-dxs, pLY036 plasmid | This study |
W-SX036 | BW25113, pSB1s-dxs and pLY036 plasmids | This study |
P-SX036 | Δpgi, pSB1s-dxs and pLY036 plasmids | This study, KEIO |
TX-SX036 | PT5-dxs, pSB1s-dxs and pLY036 plasmids | This study |
PTX-SX036 | Δpgi PT5-dxs, pSB1s-dxs and pLY036 plasmids | This study |
P-AE036 | Δpgi, pBAD-eda and pLY036 plasmids | This study, KEIO |
P-A-SEX036 | Δpgi, pBAD, pSB1s-eda-dxs and pLY036 plasmids | This study, KEIO |
P-AE-SX036 | Δpgi, pBAD-eda, pSB1s- dxs and pLY036 plasmids | This study, KEIO |
P-AS-SEX036 | Δpgi, pBAD-SS, pSB1s-eda-dxs and pLY036 plasmids | This study, KEIO |
PD-SX036 | ΔpgiΔedd, pSB1s-dxs and pLY036 plasmids | This study |
PG-SX036 | ΔpgiΔgnd, pSB1s-dxs and pLY036 plasmids | This study |
P-AEG036 | Δpgi, pBAD-eda-gnd and pLY036 plasmids | This study, KEIO |
P-AEGG036 | Δpgi, pBAD-eda-GCgnd and pLY036 plasmids | This study, KEIO |
PG036 | ΔpgiΔgnd, pLY036 plasmid | This study |
PG-AE036 | ΔpgiΔgnd, pBAD-eda and pLY036 plasmids | This study |
PG-AEG036 | ΔpgiΔgnd, pBAD-eda-gnd and pLY036 plasmids | This study |
PG-AEGG036 | ΔpgiΔgnd, pBAD-eda-GCgnd and pLY036 plasmids | This study |
W-SXID036 | BW25113, pSB1s-dxs-idi-ispDF and pLY036 plasmids | This study |
P-SXID036 | Δpgi, pSB1s-dxs-idi-ispDF and pLY036 plasmids | This study, KEIO |
KA-SXID036 | ΔpfkA, pSB1s-dxs-idi-ispDF and pLY036 plasmids | This study |
KAB-SXID036 | ΔpfkAΔpfkB, pSB1s-dxs-idi-ispDF and pLY036 plasmids | This study |
PKAB-SXID036 | ΔpgiΔpfkAΔpfkB, pSB1s-dxs-idi-ispDF and pLY036 plasmids | This study |
PF-SXID036 | ΔpgiΔfbaB, pSB1s-dxs-idi-ispDF and pLY036 plasmids | This study |
PY-SXID036 | ΔpgiΔytjC, pSB1s-dxs-idi-ispDF and pLY036 plasmids | This study |
PTXI036 | Δpgi PT5-dxs PT5-idi, pLY036 plasmids | This study |
PTXI-SXID036 | Δpgi PT5-dxs PT5-idi, pSB1s-dx -idi-ispDF and pLY036 plasmids | This study |
W10RK | BW25113, pLY10RK plasmid | This study |
TXI-SXID10RK | PT5-dxs PT5-idi, pSB1s-dx -idi-ispDF and pLY10RK plasmids | This study |
PTXI-SXID10RK | Δpgi PT5-dxs PT5-idi, pSB1s-dx -idi-ispDF and pLY10RK plasmids | This study, KEIO |
PTXIGK-AEGG-SXID10RK | Δpgi, PT5-dxsPT5-idi, ΔptsGgalR::P119-glk, pBAD-eda-GCgnd, pSB1s-dxs-idi-ispDF and pLY10RK plasmids | This study, KEIO |
Other bacterial strains | ||
Anabaena sp. PCC7120 | crtE, crtB for pLY036 | Our lab |
Rhodobacter sphaeroides 2.4.1 | crtI for pLY036 | Our lab |
Pantoea ananatis | crtB. crtI for pLY10RK | Our lab |
Pantoea agglomerans | crtE for pLY10RK | Our lab |
Plasmids | ||
pKD46 | For lambda-Red mediated recombination | [25] |
pUKM | For lambda-Red mediated recombination, derived from pKD4 by inserting multiple cloning site closed to FRT | Our lab |
pCP20 | For lambda-Red mediated recombination | [25] |
pUKM-T5 | For construction of TX and TI, derived from pUKM by inserting T5 promoter at multiple cloning site | This study |
pBAD-HisA | ColE1 origin, araBAD promoter, AmpR | Invitrogen |
pSB1s | pSC101 origin, araBAD promoter, StrR | Our lab |
pS95s | pSC101 origin, constitutive P119 promoter (derived from iGEM part BBa_J23119), StrR | Our lab |
pS95s-glk | pSC101 origin, constitutive P119 promoter, StrR,E. coli glk, for construction of pUKM-glk | This study |
pUKM-glk | For construction of GRK, derived from pUKM by inserting P119-glk fragment at multiple cloning site | This study |
pLY036 | p15A origin, araBAD promoter, CmR, Anabaena sp crtEB, R. sphaeroides crtI, E. coli idi | This study |
pLY10RK | RSF1030 origin, araBAD promoter, KanR, P. agglomerans crtE, P. ananatis crtBI, E. coli idi | This study |
pSB1s-dxs | pSC101 origin, araBAD promoter, StrR,E. coli dxs | This study |
pSB1s-eda-dxs | pSC101 origin, araBAD promoter, StrR, dockerin-fused E. coli eda, dockerin-fused E. coli dxs | This study |
pSB1s-dxs-idi-ispDF | pSC101 origin, araBAD promoter, StrR, E. coli dxs,idi,ispDF | This study |
pBAD-zwf | ColE1 origin, araBAD promoter, AmpR, E. coli zwf | This study |
pBAD-edd | ColE1 origin, araBAD promoter, AmpR, E. coli edd | This study |
pBAD-eda | ColE1 origin, araBAD promoter, AmpR, E. coli eda | This study |
pBAD-eda-gnd | ColE1 origin, araBAD promoter, AmpR, E. coli eda,gnd | This study |
pBAD-eda-GCgnd | ColE1 origin, araBAD promoter, AmpR, E. coli eda,GCtag-gnd | This study |
pBAD-SS | ColE1 origin, araBAD promoter, AmpR, clostridium sp cellulose scaffold protein | This study |