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Table 1 Strains and plasmids

From: Bacterial xylose isomerases from the mammal gut Bacteroidetes cluster function in Saccharomyces cerevisiae for effective xylose fermentation

Strain/Plasmid

Genotype/Property

Saccharomyces cerevisiae

 

ATCC24860

Obtained from American Type Culture Collection

MATα/MATa

JUK36a

ATCC 24860 derivative;

MATa ura3::loxP TKL1(-268, -1):: T RKI1 - RKI1-P ADH1 -T RPE1 -RPE1-P TPI1 -LoxP-T XKS1 -XKS1-P PGK1 -P PDC1 -TAL1-T TAL1 -P FBA1 gre3::loxP

JUK39a

JUK36a derivative; cyc3::loxP

JUK50a

JUK36a derivative; {pJFE11}

JUK51a_1

JUK36a derivative; {pJFX11-TDH3p}

JUK51a_2

JUK36a derivative; {pJFX11}

JUK52a

JUK36a derivative; {pJFX12}

JUK53a

JUK36a derivative; {pJFX13}

JUK54a

JUK36a derivative; {pJFX14}

JUK61a

JUK39a derivative; {pJFX11-TDH3p}

JUKx11a

Obtained from the adaptive cultivation of JUK61a on xylose

JUK36a1

JUK51a_1 derivative with the loss of pJFX11-TDH3p

JUK39a1

JUKx11a derivative with the loss of pJFX11-TDH3p

36a(Bvu)

JUK36a1 derivative; {pPY1-Bvu}

36a(XIq)

JUK36a1 derivative; {pPY1-XIq}

36a(TAA)

JUK36a1 derivative; {pPY1-TAA}

36a(HGB5)

JUK36a1 derivative; {pPY1-HGB5}

36a(YIT)

JUK36a1 derivative; {pPY1-YIT}

39a(Bvu)

JUK39a1 derivative; {pPY1-Bvu}

39a(XIq)

JUK39a1 derivative; {pPY1-XIq}

39a(TAA)

JUK39a1 derivative; {pPY1-TAA}

39a(HGB5)

JUK39a1 derivative; {pPY1-HGB5}

39a(YIT)

JUK39a1 derivative; {pPY1-YIT}

Plasmids

 

pJPPP-XK

pUC19, genomic integrative plasmid used to overexpress Saccharomyces cerevisiae endogenous genes RPE1, RKI1, TAL1, TKL1 and XKS1

pJFX11-TDH3p

YEp, PTDH3-TPGK1, Bacteroides vulgatus XI

pJFE11

YEp, PTEF1-TCYC1

pJFX11

pJFE11, Bacteroides vulgatus XI

pJFX12

pJFE11, Piromyces sp. E2 XI

pJFX13

pJFE11, SmmXylA1 XI

pJFX14

pJFE11, SmmXylA10 XI

pPY1

pYES2, PPGK1-TCYC1

pPY1-Bvu

pPY1, Bacteroides vulgatus XI

pPY1-XIq

pPY1, Orpinomyces sp. ukk1 XI

pPY1-TAA

pPY1, Tannerella sp. 6_1_58FAA_CT1 XI

pPY1-HGB5

pPY1, Alistipes sp. HGB5 XI

pPY1-YIT

pPY1, Paraprevotella xylaniphila XI