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Table 3 Clustering of genes encoding CAZy family enzymes (glycoside hydrolases, carbohydrate esterases, polysaccharide lyases, and auxiliary activities) based on the expression array data

From: The effects of extracellular pH and of the transcriptional regulator PACI on the transcriptome of Trichoderma reesei

Gene ID

Name

CAZy family

CAZy annotation

Co-clustering with candidate PACI induced genes

Co-clustering with cand. PACI repressed genes

72072

 

CE1

Candidate esterase

Cluster 49

 

44366

 

CE3

Candidate esterase

Cluster 49

 

79671

 

CE9

N-acetyl-glucosamine-6-phosphate deacetylase

Cluster 49

 

108348

 

GH

Unknown

Cluster 49

 

123818

xyn2

GH11

Endo-beta-1,4-xylanase

Cluster 49

 

65406

 

GH16

Candidate cell wall glucanosyltransferase

Cluster 49

 

109278

 

GH24

Candidate lysozyme

Cluster 49

 

47268

bgl3i

GH3

Candidate beta-glucosidase

Cluster 49

 

77942

 

GH72

Candidate beta-1 3-glucanosyltransferase

Cluster 49

 

122495

 

GH76

Candidate alpha-1,6-mannanase

Cluster 49

 

79921

 

GH92

Candidate alpha-1,2-mannosidase

Cluster 49

 

103825

 

CE16

Candidate acetyl esterase

 

Cluster 25

41248

 

CE3

Candidate acetyl xylan esterase

 

Cluster 25

65215

 

CE4

Candidate imidase

 

Cluster 25

4221

 

GH105

Candidate rhamnogalacturonyl hydrolase

 

Cluster 25

73101

 

GH16

Candidate glucan endo-1,3-1,4-beta-D-glucosidase

 

Cluster 25

70542

 

GH16

Candidate b-glycosidase (endo-beta-1,3(4)-beta-D-glucanase)

 

Cluster 20

110317

chi18-17

GH18

Candidate chitinase

 

Cluster 25

76852

 

GH2

Candidate beta-galactosidase/beta-glucuronidase

 

Cluster 20

72632

agl1

GH27

alpha-galactosidase

 

Cluster 15

27219

 

GH27

Candidate alpha-galactosidase

 

Cluster 15

27259

 

GH27

Candidate alpha-galactosidase

 

Cluster 15

70186

 

GH28

Candidate polygalacturonase/xylogalacturonan hydrolase

 

Cluster 15

58450

xyl3b

GH3

Candidate beta-xylosidase

 

Cluster 15

69736

 

GH30

Candidate glucan endo 1,6-beta-glucanase

 

Cluster 25

80240

bga1

GH35

Ceta-galactosidase

 

Cluster 20

73102

 

GH39

Candidate beta-xylosidase

 

Cluster 15

73248

 

GH55

Candidate exo-1,3-beta-glucanase

 

Cluster 15

69123

 

GH76

Candidate alpha-1,6-mannanase

 

Cluster 25

71394

 

GH79

Candidate beta-glucuronidase

 

Cluster 25

74198

 

GH92

Candidate alpha-1,2-mannosidase

 

Cluster 25

72488

 

GH95

Candidate alpha-L-fucosidase

 

Cluster 15

105288

 

GHNA

Unknown

 

Cluster 15

69189

 

PL20

Candidate endo-beta-1,4-glucuronan lyase

 

Cluster 25

  1. Mfuzz was used for clustering of the microarray expression data, and genes that encode CAZy enzymes and co-cluster with the candidate PACI-regulated genes are listed.