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Table 3 Clustering of genes encoding CAZy family enzymes (glycoside hydrolases, carbohydrate esterases, polysaccharide lyases, and auxiliary activities) based on the expression array data

From: The effects of extracellular pH and of the transcriptional regulator PACI on the transcriptome of Trichoderma reesei

Gene ID Name CAZy family CAZy annotation Co-clustering with candidate PACI induced genes Co-clustering with cand. PACI repressed genes
72072   CE1 Candidate esterase Cluster 49  
44366   CE3 Candidate esterase Cluster 49  
79671   CE9 N-acetyl-glucosamine-6-phosphate deacetylase Cluster 49  
108348   GH Unknown Cluster 49  
123818 xyn2 GH11 Endo-beta-1,4-xylanase Cluster 49  
65406   GH16 Candidate cell wall glucanosyltransferase Cluster 49  
109278   GH24 Candidate lysozyme Cluster 49  
47268 bgl3i GH3 Candidate beta-glucosidase Cluster 49  
77942   GH72 Candidate beta-1 3-glucanosyltransferase Cluster 49  
122495   GH76 Candidate alpha-1,6-mannanase Cluster 49  
79921   GH92 Candidate alpha-1,2-mannosidase Cluster 49  
103825   CE16 Candidate acetyl esterase   Cluster 25
41248   CE3 Candidate acetyl xylan esterase   Cluster 25
65215   CE4 Candidate imidase   Cluster 25
4221   GH105 Candidate rhamnogalacturonyl hydrolase   Cluster 25
73101   GH16 Candidate glucan endo-1,3-1,4-beta-D-glucosidase   Cluster 25
70542   GH16 Candidate b-glycosidase (endo-beta-1,3(4)-beta-D-glucanase)   Cluster 20
110317 chi18-17 GH18 Candidate chitinase   Cluster 25
76852   GH2 Candidate beta-galactosidase/beta-glucuronidase   Cluster 20
72632 agl1 GH27 alpha-galactosidase   Cluster 15
27219   GH27 Candidate alpha-galactosidase   Cluster 15
27259   GH27 Candidate alpha-galactosidase   Cluster 15
70186   GH28 Candidate polygalacturonase/xylogalacturonan hydrolase   Cluster 15
58450 xyl3b GH3 Candidate beta-xylosidase   Cluster 15
69736   GH30 Candidate glucan endo 1,6-beta-glucanase   Cluster 25
80240 bga1 GH35 Ceta-galactosidase   Cluster 20
73102   GH39 Candidate beta-xylosidase   Cluster 15
73248   GH55 Candidate exo-1,3-beta-glucanase   Cluster 15
69123   GH76 Candidate alpha-1,6-mannanase   Cluster 25
71394   GH79 Candidate beta-glucuronidase   Cluster 25
74198   GH92 Candidate alpha-1,2-mannosidase   Cluster 25
72488   GH95 Candidate alpha-L-fucosidase   Cluster 15
105288   GHNA Unknown   Cluster 15
69189   PL20 Candidate endo-beta-1,4-glucuronan lyase   Cluster 25
  1. Mfuzz was used for clustering of the microarray expression data, and genes that encode CAZy enzymes and co-cluster with the candidate PACI-regulated genes are listed.