Table 1 List of selected reactions contained in the RN and GN model and associated reaction IDs that will be used when discussing results of CASOP and cut set analysis

NADPH + 5 H ⁺ + PQ ⇒ NADP ⁺ + PQH ₂ + 4 H${}_{\text{tll}}^{+}$

NADPH + 4 H ⁺ + PQ + H ₂O + CO ₂ ⇒ NADP ⁺ + PQH ₂ + 4 H${}_{\text{tll}}^{+}$ + HCO3 ^-

4 Reduced plastocyanin + O ₂ + 8 H ⁺ ⇒ 4 Oxidized plastocyanin + 4 H${}_{\text{tll}}^{+}$ + 2 H ₂O

2 PQH ₂ + O ₂ + 4 H ⁺ ⇒ 2 PQ + 4 H${}_{\text{tll}}^{+}$ + 2 H ₂O

O ₂ + Reduced ferredoxin ⇒ Oxidized ferredoxin + O${}_2^{-}$

2 O${}_2^{-}$ + 2 H ⁺ ⇒ H ₂ O ₂ + O ₂

PQ + 2 Reduced ferredoxin + 2 H ⁺ ⇒ 2 Oxidized ferredoxin + PQH ₂

D-Ribulose 1,5-bisphosphate + O ₂ ⇒ 3-Phospho-D-glycerate + 2-Phosphoglycolate

O ₂⇒ O _2cax

2-Phosphoglycolate + H ₂O ⇒ Glycolate + Orthophosphate

2-Phosphoglycolate _cax⇒ 2-Phosphoglycolate

NADPH + NAD ⁺ ⇔ NADP ⁺ + NADH

ATP + Acetate ⇔ ADP + Acetyl-phosphate

sn-Glycerol 3-phosphate + NAD ⁺ ⇔ Glycerone-phosphate + NADH + H ⁺

ATP + Glycerol ⇒ ADP + sn-Glycerol3-phosphate

Glycerol + NADP ⁺ ⇔ D-Glyceraldehyde + NADPH + H ⁺

D-Glyceraldehyde + NAD ⁺ + H ₂O ⇔D-Glycerate + NADH + H ⁺

5,10-Methylenetetrahydrofolate + Glycine + H ₂O ⇔ Tetrahydrofolate + L-Serine

Glycine + Tetrahydrofolate + NAD ⁺ ⇒ 5,10-Methylenetetrahydrofolate + NH3 + CO2 + NADH + H ⁺

D-Glycerate + NADP ⁺ ⇔ Hydroxypyruvate + NADPH + H ⁺

L-Serine + Glyoxylate ⇔ Hydroxypyruvate + Glycine

Glycine + 2-Oxoglutarate ⇔ Glyoxylate +L-Glutamate

3-Phospho-D-glycerate + NAD ⁺ ⇔ 3-Phosphonooxypyruvate + NADH + H ⁺

O-Phospho-L-serine + 2-Oxoglutarate ⇔ 3-Phosphonooxypyruvate + L-Glutamate

O-Phospho-L-serine + H ₂O ⇒ L-Serine +Orthophosphate

(S)-Malate + NAD ⁺ ⇔ Oxaloacetate + NADH + H ⁺

D-Fructose-6-phosphate + Orthophosphate ⇒ Acetyl-phosphate + D-Erythrose-4-phosphate + H ₂O

D-Xylulose-5-phosphate + Orthophosphate ⇒ Acetyl-phosphate + D-Glyceraldehyde-3-phosphate + H ₂O

Ethanol ⇒ Ethanol _ex

Acetaldehyde + NADPH + H ⁺⇒ Ethanol + NADP ⁺

Pyruvate ⇒ CO ₂ + Acetaldehyde

ADP + Phosphoenolpyruvate ⇒ ATP + Pyruvate

CO ₂ ⇒ CO _{2e x t}

ATP + D-Fructose-6-phosphate ⇒ ADP + D-Fructose-1,6-bisphosphate

1 ATP + H ₂O ⇒ 1 ADP + Orthophosphate

Cyanophycine + 2 H ₂O ⇒ 1 L-Aspartate + 1 L-Arginine + Cyanophycin-polymer

1 L-Aspartate + 1 L-Arginine + 2 ATP + Cyanophycin-polymer ⇒ Cyanophycin + 2 Orthophosphate + 2 ADP

ATP + Sedoheptulose-7-phosphate ⇒ ADP + Sedoheptulose-1,7-bisphosphate