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Table 3 Gene ontology (GO) terms.

From: Increased expression of the oxidative pentose phosphate pathway and gluconeogenesis in anaerobically growing xylose-utilizing Saccharomyces cerevisiae

Comparison

Regulation

GO ID

Term

Glucose Aerobic-Anaerobic (C1)

Up

ND

ND

 

Down

GO:0055114

oxidation reduction

  

GO:0015980

energy derivation by oxidation of organic compounds

  

GO:0006119

oxidative phosphorylation

Xylose Aerobic-Anaerobic (C3)

Up

GO:0006066

cellular alcohol metabolic process

  

GO:0019320

hexose catabolic process

  

GO:0007047

cell wall organization

 

Down

GO:0042254

ribosome biogenesis

  

GO:0008652

amino acid biosynthetic process

  

GO:0016072

rRNA metabolic process

C1&C3

Up

ND

ND

 

Down

GO:0043102

amino acid salvage

  

GO:0045333

cellular respiration

Aerobic Glucose - Xylose (C2)

Up

GO:0007005

mitochondrion organization

  

GO:0045333

cellular respiration

  

GO:0022900

electron transport chain

 

Down

GO:0032268

regulation of cellular protein metabolic process

  

GO:0006066

cellular alcohol metabolic process

Anaerobic Glucose - Xylose (C4)

Up

GO:0015980

energy derivation by oxidation of organic compounds

  

GO:0019318

hexose metabolic process

 

Down

GO:0042254

ribosome biogenesis

  

GO:0008652

amino acid biosynthetic process

  

GO:0016072

rRNA metabolic process

C2&C4

Up

GO:0006119

oxidative phosphorylation

 

Down

ND

ND

  1. Up- and down-regulated gene ontology (GO) terms identified within comparisons C1-C4 (Figure 2B). If no significantly over-represented GO terms were found, this was indicated by "ND" for "not detected".