Table 2 Functional classification of metabolic reactions in a C. glutamicum genome-scale model.
Carbohydrate metabolism | 45 | Metabolism of complex carbohydrate | 66 |
|---|---|---|---|
glycolysis/gluconeogenesis | 18 | arabinogalactan biosynthesis | 2 |
TCA cycle | 17 | dTDP-rhamnose biosynthesis | 5 |
pentose phosphate pathway | 8 | D-lactate metabolism | 5 |
Entner-Doudoroff pathway | 2 | GDP-mannose metabolism | 5 |
Energy metabolism | 17 | glycerol and glycerophosphodiester degradation | 2 |
Lipid metabolism | 32 | mevalonate pathway | 9 |
fatty acid biosynthesis | 15 | UDP-N-acetylgalactosamine biosynthesis | 7 |
phospholipid biosynthesis | 17 | UDP-glucose conversion | 3 |
Nucleotide metabolism | 84 | isopentenyl diphosphate biosynthesis | 8 |
PRPP biosynthesis | 1 | glutathione redox reactions | 4 |
purinebiosynthesis | 29 | myo-inositol biosynthesis | 2 |
pyrimidine biosynthesis | 23 | Polysaccharide biosynthesis | 1 |
nucleotide salvage pathway | 31 | peptidoglycan biosynthesis | 13 |
Amino acid metabolism | 103 | Metabolism of complex lipid | 13 |
glutamate biosynthesis | 2 | MAPc biosynthesis | 1 |
glutamine biosynthesis | 1 | PIM2 biosynthesis | 2 |
alanine biosynthesis | 3 | Mycolyl-ACP biosynthesis | 1 |
valine biosynthesis | 3 | polyamine biosynthesis | 7 |
aspartate biosynthesis | 1 | Corynomycolate biosynthesis | 2 |
lysine biosynthesis | 11 | Metabolism of cofactors and vitamins | 67 |
arginine biosynthesis | 9 | ATP maintenance | 1 |
asparagine biosynthesis | 2 | coenzyme A biosynthesis | 5 |
threonine biosynthesis | 2 | folate transformations | 2 |
isoleucine biosynthesis | 5 | formylTHF biosynthesis | 9 |
leucine biosynthesis | 4 | NAD biosynthesis | 19 |
proline biosynthesis | 5 | O-antigen biosynthesis | 1 |
serine biosynthesis | 3 | pantothenate biosynthesis | 6 |
tyrosine biosynthesis | 3 | riboflavin and FMN and FAD biosynthesis | 9 |
tryptophan biosynthesis | 6 | tetrahydrofolate biosynthesis | 15 |
cysteine biosynthesis | 2 | Metabolism of other amino acids | 9 |
phenylalanine biosynthesis | 3 | homoserine biosynthesis | 1 |
glycine biosynthesis | 1 | chorismate biosynthesis | 7 |
methionine biosynthesis | 17 | spermine biosynthesis | 1 |
histidine biosynthesis | 10 | Metabolism of sugars | 14 |
interconversion of arginine, ornithine and proline | 10 | trehalose biosynthesis | 2 |
| Â | Â | starch biosynthesis | 12 |
| Â | Â | Transport pathway | 31 |
| Â | Â | Biomass synthesis | 1 |
| Â | Â | Exchange pathway | 34 |