Coding sequence | Total codons | RIL codon contenta | % of RIL codons | % of Rare codonsb | GC Content (%) | Descriptionc | ||
---|---|---|---|---|---|---|---|---|
Arg AGA/AGG | Ile ATA | Leu CTA | ||||||
fd | 97 | 1/1 | 0/4 | 1/6 | 2.1 | 24.7 | 40 | pea ferredoxin |
clpt1 | 178 | 3/4 | 1/8 | 2/20 | 3.4 | 9.6 | 48 | 05-08-O17 – accessory protein of the chloroplastic ClpP protease complex |
fnr | 308 | 7/8 | 2/12 | 2/21 | 3.6 | 19.8 | 42 | pea ferredoxin-NADP(H) reductase |
clpp4 | 235 | 6/11 | 4/26 | 0/18 | 4.3 | 20.4 | 44 | 04-15-O12 – component of the chloroplastic ClpP protease complex |
clpc2 | 834 | 32/64 | 10/61 | 9/82 | 6.1 | 12.6 | 46 | 09-19-G11 – chloroplastic chaperone |
clpd | 865 | 33/56 | 16/62 | 8/85 | 6.4 | 15.1 | 46 | 05-05-I08 – chloroplastic chaperone |
clpr2 | 224 | 10/18 | 4/13 | 4/19 | 8.0 | 21.9 | 47 | 06-10-N03 – component of the chloroplastic ClpP protease complex |
dsRBD2 | 82 | 6/6 | 0/2 | 7/19 | 8.5 | 23.2 | 43 | Second double-stranded RNA-binding domain of DICER1 (Arabidopsis thaliana) |
trx | 109 | 0/1 | 0/9 | 0/13 | 0.0 | 3.7 | 52 | E. coli thioredoxin |
E. coli | - | - | - | - | - | - | 51 | Escherichia coli K12 NCBI RefSeq Accession NC000913 |
A. thaliana | - | - | - | - | - | - | 36d | Whole genome data at NCBI |