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Table 1 Genome statistics overview

From: Genome, secretome and glucose transport highlight unique features of the protein production host Pichia pastoris

Sequencing Data:

 

Total DNA bases after Roche GS FLX

9,408,251

Average coverage Roche GS FLX

22

Total DNA bases after Illumina GA

9,405,451

Average coverage Illumina GA

60

Number of reads Roche FLX

562,515

Number of reads Illumina GA

15,761,520

Number of contigs

326

Contigs > 1 kbp

153

Largest contig

419,475

Smallest contig

128

Average contig size

28,906

GC content

41.34%

Gene Prediction Data:

 

Predicted ORFs

7,935

Manually curated number of ORFs

5,450

Thereof ORFs with introns

741

Truncated ORFs

194

ORFs with annotation

4,257

GC content coding regions

41.90%

RNA Prediction Data:

 

tRNA genes

149

5S rRNA

14

rRNA cluster (18S, 26S, 5.8S rRNA)

1