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Table 4 The presence of cytochrome genes in the sequenced lactic acid bacteria.

From: Heme and menaquinone induced electron transport in lactic acid bacteria

locus annotated as bd- cytochrome genes or with BLAST similarity%a:

 

structural subunits I & II

associated ABC transporter

Species

(cydA)

(cydB)

(cydC)

(cydD)

Enterococcus faecalis V583

EF2061

EF2060

EF2059e

EF2058

Lactobacillus brevis ATCC 367

LVIS_1642

LVIS_1641

 

LVIS_1639

Lactobacillus casei ATCC 334

LSEI_2205

LSEI_0012b

LSEI_2204

LSEI_2203

LSEI_2202

Lactobacillus gasseri ATCC 33323

LGAS_1841

LGAS_1842

LGAS_1843

LGAS_1844

Lactobacillus johnsonii NCC 533

LJ1810

LJ1811

LJ1812 (2e-116)

LJ1813 (5e-110)

Lactobacillus plantarum WCFS1

lp_1125

lp_1126

lp_1128

lp_1129

Lactobacillus reuteri 100-23

eLr_0600

eLr_0599

eLr_0598 (3e-140)

eLr_0597(3e-120)

Lactobacillus reuteri F275

Lreu_0505

Lreu_0506

Lreu_0507 (1e-136)

Lreu_0508 (6e-121)

Lactobacillus salivarius UCC118

LSL_1032

LSL_1031

LSL_1030 (1e-137)

LSL_1029 (3e-131)

Lactococcus lactis MG1363

llmg_1864

llmg_1863

llmg_1862

llmg_1861

Lactococcus lactis SK11

lacr_0737

lacr_0738

lacr_0739

lacr_0740

Lactococcus lactis Il1403

L107762

L109201

L110479

L112352

Leuconostoc mesenteroides ATCC 8293

LEUM_0560

LEUM_0561

LEUM_0562d

LEUM_0563c

Oenococcus oeni ATCC BAA-1163

OENOO_65065

OENOO_65064

OENOO_66040

OENOO_66039

Oenococcus oeni PSU-1

OEOE_1837

OEOE_1836

OEOE_0414

OEOE_0415

Streptococcus agalactiae 18RS21

SAJ_1696

SAJ_1694

SAJ_1693d

SAJ_1692c

Streptococcus agalactiae 2603V/R

SAG1742

SAG1741

SAG1739d

SAG1740c

Streptococcus agalactiae 515

SAL_1843

SAL_1842

SAL_1841d

SAL_1840c

Streptococcus agalactiae A909

SAK_1750

SAK_1749

SAK_1748d

SAK_1747c

Streptococcus agalactiae CJB111

SAM_1705

SAM_1704

SAM_1703d

SAM_1702c

Streptococcus agalactiae COH1

SAN_1868

SAN_1867

SAN_1866d

SAN_1865c

Streptococcus agalactiae H36B

SAI_1857

SAI_1856

SAI_1855d

SAI_1851c

Streptococcus agalactiae NEM316

gbs1787 (2e-140)

gbs1786 (1e-99)

gbs1785 (1e-142)

gbs1784 (5e-132)

  1. aBlast against MG1363 cyd-genes bfusion of subunit 1 and subunit 2 cBest hit with MG1363 CydC, annotated as CydD dBest hit with MG1363 CydD, annotated as CydC eLVIS_1640 is a pseudo gene SAJ_1695 is a cydA pseudo gene SAI_1865 E = 5e-37 annotated as cydA SAI_1866 E = 2e-7 annotated as cydA, eLr is an abbreviation of "Lreu23DRAFT".
  2. All cydABCD genes were absent in Lactobacillus sakei 23K, Lactobacillus delbrueckii (strains ATCC 11842, ATCC BAA-365), Enterococcus faecium DO, Lactobacillus acidophilus NCFM, Pediococcus pentosaceus ATCC 25745, Streptococcus gordonii CH1, Streptococcus mutans UA159, Streptococcus pneumoniae (strains D39, R6, SP11-BS70, SP14-BS69, SP18-BS74, SP19-BS75, SP23-BS72, SP3-BS71, SP6-BS73, SP9-BS68, TIGR4), Streptococcus pyogenes (strains M1 GAS, M49 591, MGAS10270, MGAS10394, MGAS10750, MGAS2096, MGAS315, MGAS5005, MGAS6180, MGAS8232, MGAS9429, SSI-1, Manfredo), Streptococcus sanguinis SK36, Streptococcus suis (strains 05ZYH33, 89/1591, 98HAH33) and Streptococcus thermophilus (strains CNRZ1066, LMD-9, LMG 18311).