Table 2 Gene clusters for secondary metabolites production and the number of probe-sets lacking on the Chip
From: Complete gene expression profiling of Saccharopolyspora erythraea using GeneChip DNA microarrays
Clusters | Genes number | Probeset SACE ID | Probeset lacking on Chip |
|---|---|---|---|
Terpenes | Â | Â | Â |
tpc1 (geo1) | 1 | 3187 | -- |
tpc2 | 3 | 3721–3723 | -- |
tpc3 (geo2) | 4 | 3976–3979 | -- |
hop | 5 | 4327–4331 | -- |
tpc4 | 10 | 4645–4654 | -- |
tpc5 (geo3) | 4 | 4906–4909 | -- |
Polyketides | Â | Â | Â |
pfa | 11 | 0018–0028 | -- |
ery | 21 | 0712–0721, 0723–0734 | -- |
rpp | 4 | 1241–1244 | -- |
pks1 | 6 | 2342–2347 | -- |
pks2 | 4 | 2628–2631 | -- |
pks3 | 16 | 2864–2879 | 2864 |
pke | 18 | 4128–4145 | -- |
pks4 | 6 | 4302–4307 | -- |
pks5 | 8 | 4471–4478 | -- |
pks6 | 12 | 4567–4578 | -- |
pks7 | 4 | 5306–5309 | -- |
pks8 | 1 | 5532 | -- |
Non-ribosomal peptides | Â | Â | Â |
nrps1 | 7 | 1304–1310 | 1307 |
nrps2-pks | 4 | 2618–1622 | 2621 |
nrps3 | 12 | 2692–2703 | -- |
nrps4 | 5 | 3013–3017 | -- |
nrps5 | 11 | 3029–3039 | 3037–3038 |
nrps6 | 7 | 3223–3229 | -- |
nrps7 | 18 | 4275–4292 | 4291 |
Total | 202 | Targeted | 196 |