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Table 4 Crossover between genotype affected genes and hydrogen peroxide affected genes. Genes presented in this table are the common transcripts (16) between the two studied datasets: genotype and treatment. Further a summary of the regulation pattern for each of the depicted transcripts is given.

From: Thioredoxin reductase is a key factor in the oxidative stress response of Lactobacillus plantarum WCFS1

  FC1     Transcript Behavior
Locus genotype treatment Gene Product Main Functional Class up conflicting
lp_2716 1,6 0,7 ica3 glycosyltransferase (putative) Cell envelope  
lp_0728 0,6 1,7 groEL GroEL chaperonin Cellular processes  
lp_2544 1,6 5,0 npr2 NADH peroxidase   
lp_3020 1,6 0,7 tag2 DNA-3-methyladenine glycosylase I DNA metabolism  
lp_0789 1,7 1,8 gapB glyceraldehyde 3-phosphate dehydrogenase Energy metabolism  
lp_1081 1,6 0,5   unknown Hypothetical proteins  
lp_1611 2,1 32,9   unknown   
lp_1708 2,3 4,2   unknown   
lp_1880 3,9 2,9   unknown   
lp_2119 1,7 1,8 tuf elongation factor Tu Protein synthesis  
lp_2721 1,5 3,1 purN phosphoribosylglycinamide formyltransferase Purines, pyrimidines, nucleosides and nucleotides  
lp_2722 1,6 3,4 purM phosphoribosylformylglycinamidine cyclo-ligase   
lp_2729 1,7 1,8 purE phosphoribosylaminoimidazole carboxylase, catalytic subunit   
lp_0761 23,5 1,8 trxB1 thioredoxin reductase (NADPH)   
lp_1087 1,8 0,6   cation transport protein Transport and binding proteins  
lp_2992 2,6 1,8 mntH2 manganese transport protein   
  1. 1FC is fold change or 2M