Table 2 PSF E. coli expression clones with soluble expression products. The table corresponds to the proteins shown in Figure 2. More detailed information is available in the supplementary XML file, Additional file 1.

39

ACAT2, acetyl-Coenzyme A acetyltransferase 2

AAM00223

PSFEp250C082

partly, none

44,177

D, 24

203

AK1, adenylate kinase 1

BAA78534

PSFEp250B112

yes, none

DQ000549

24,558

C, 21

689

BTF3, basic transcription factor 3

CAA37376

PSFEp758D0224

no

20,622

A, 27

830

CAPZA2, capping protein (actin filament) muscle Z-line, alpha 2

AAC60382

PSFEp758H1226

no

59,649

A, 4

1036

CDO1, cysteine dioxygenase, type I

BAA12872

PSFEp758D0124

yes, none

DQ000531

25,895

E, 16

1428

CRYM, crystallin, mu

AAC16914

PSFEp758B0810

yes, none

DQ000499

36,275

D, 4

1460

CSNK2B, casein kinase 2, beta polypeptide

CAA34379

PSFEp758H0422

no

26,209

B, 12

1606

DGKA, diacylglycerol kinase, alpha 80kDa

AAC34806

PSFEp758F0324

yes, none

DQ000529

16,408

A, 23

1627

DBN1, drebrin 1

AAH07567

PSFEp250C052

partly, none

74,354

C, 31

1635

DCTD, dCMP deaminase

AAC37579

PSFEp250B121

yes, none

DQ000535

22,938

E, 25

1937

EEF1G, eukaryotic translation elongation factor 1 gamma

AAH15813

PSFEp250H061

partly, none

53,045

C, 11

1974

EIF4A2, eukaryotic translation initiation factor 4A, isoform 2

AAH48105

PSFEp250H052

partly, none

49,301

D, 20

2963

GTF2F2, general transcription factor IIF, polypeptide 2, 30 kDa

CAA42419

PSFEp250B012

yes, none

DQ000547

31,304

C, 17

2992

GYG, glycogenin

AAB00114

PSFEp758H1122

yes, none

DQ000517

40,403

B, 4

3151

HMGN2, high-mobility group nucleosomal binding domain 2

AAA52678

PSFEp250E102

yes, none

DQ000559

12,314

D, 27

3312

HSPA8, heat shock 70 kDa protein 8

BAB18615

PSFEp250E022

partly, none

56,444

D, 31

3735

KARS, lysyl-tRNA synthetase

AAH04132

PSFEp250D032

partly, A116G

70,976

D, 16

3925

STMN1, stathmin 1/oncoprotein 18

CAC16020

PSFEp250F072

yes, none

DQ000556

20,225

D, 19

4043

LRPAP1, low density lipoprotein receptor-related protein associated protein 1

AAC67373

PSFEp250G031

yes, none

DQ000540

44,391

C, 22

4695

NDUFA2, NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2

AAD27762

PSFEp250D091

no

13,843

C, 13

4698

NDUFA5, NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5

AAD21526

PSFEp250A0510

no

16,381

A, 13

5184

PEPD, peptidase D

AAH28295

PSFEp250H122

yes, none

DQ000560

D, 29

5202

PFDN2, prefoldin 2

AAF17218

PSFEp250D112

yes, none

DQ000555

19,570

D, 17

5412

UBL3, ubiquitin-like 3

AAD02323

PSFEp758A0510

yes, none

DQ000501

15,657

5502

PPP1R1A, protein phosphatase 1, regulatory (inhibitor) subunit 1A

AAB02402

PSFEp758G0124

yes, none

DQ000526

21,862

A, 15

5716

PSMD10, proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 (gankyrin)

AAH11960

PSFEp250A062

yes, none

DQ000544

27,351

C, 9

5717

PSMD11, proteasome (prosome, macropain) 26S subunit, non-ATPase, 11

AAH04430

PSFEp250B122

yes, none

DQ000548

50,390

C, 19

5877

RABIF, RAB interacting factor

AAB18264

PSFEp250C021

no

16,761

E, 23

6133

RPL9, ribosomal protein L9

BAA03401

PSFEp758E0124

yes, none

DQ000524

24,786

A, 28

6156

RPL30, ribosomal protein L30

CAA55820

PSFEp758A1113

yes, none

DQ000503

15,284

D, 6

6191

RPS4X, ribosomal protein S4, X-linked

BC007308

PSFEp758A0923

no

28,670

6342

SCP2, sterol carrier protein 2

AAA03559

PSFEp758C0723

yes, none

DQ000515

16,668

B, 1

6451

SH3BGRL, SH3 domain binding glutamic acid-rich protein like

AAC27445

PSFEp758C0713

no

15,274

D, 2

6728

SRP19, signal recognition particle 19 kDa

CAA31280

PSFEp758E0317

no

41,156

6888

TALDO1, transaldolase 1

AAB53943

PSFEp758B0711

partly, none

40,040

D, 1

6990

TCTE1L, t-complex-associated-testis-expressed 1-like

AAA57444

PSFEp758D0814

no

38,062

A, 3

6993

TCTEL1, t-complex-associated-testis-expressed 1-like 1

BAA09317

PSFEp758F1123

yes, none

DQ000521

13,719

A, 14

7001

PRDX2, peroxiredoxin 2

AAH03022

PSFEp250A042

yes, none

DQ000546

24,815

C, 30

7178

TPT1, tumor protein, translationally-controlled 1

CAA34200

PSFEp250G011

yes, none

DQ000539

22,518

C, 14

7247

TSN, translin

CAA55341

PSFEp250B111

yes, none

DQ000538

29,106

C, 12

7353

UFD1L, ubiquitin fusion degradation 1-like

N P_005650

PSFEp758G0123

yes, none

DQ000519

41,777

D, 9

7390

UROS, uroporphyrinogen III synthase

AAA60273

PSFEp758G0323

no

29,894

D, 11

7518

XRCC4, X-ray repair complementing defective repair in Chinese hamster cells 4

AAH16314

PSFEp250A033

partly, none

41,211

D, 26

7531

YWHAE, tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon

AAH01440

PSFEp250H041

yes, A146G

DQ000541

32,097

C, 24

8125

ANP32A, acidic (leucine-rich) nuclear phosphoprotein 32 family, member A

AAB91548

PSFEp250D092

yes, none

DQ000553

31,509

D, 22

8214

DGCR6, DiGeorge syndrome critical region gene 6

CAA65339

PSFEp758G0324

yes, none

DQ000533

12,111

E, 19

8407

TAGLN2, transgelin 2

BAA04802

PSFEp250F062

yes, none

DQ000550

25,314

C, 27

8544

PIR, pirin

CAA69195

PSFEp758A0213

yes, none

DQ000498

34,613

C, 1

8575

PRKRA, protein kinase, interferon-inducible double stranded RNA dependent activator

CAB66550

PSFEp250D014

yes, none

DQ000578

37,328

E, 9

8677

STX10, syntaxin 10

AAC05087

PSFEp250D102

yes, none

DQ000552

25,369

D, 18

8724

SNX3, sorting nexin 3

AAC16040

PSFEp758A0323

yes, none

DQ000514

20,029

B, 15

8896

G10, maternal G10 transcript

AAH22821

PSFEp250F011

yes, A394G

DQ000536

19,766

C, 16

8926

SNURF, SNRPN upstream reading frame

AAD31391

PSFEp250A0610

no

11,334

C, 25

9049

AIP, aryl hydrocarbon receptor interacting protein

AAB59004

PSFEp758F1024

yes, none

DQ000528

40,589

A, 21

9158

FIBP, fibroblast growth factor (acidic) intracellular binding protein

CAG33030

PSFEp250B022

partly, T602C

44,803

C, 20

9168

TMSB10, thymosin, beta 10

AAB25225

PSFEp758A0124

yes, none

DQ000522

6,292

A, 18

9337

CNOT8, CCR4-NOT transcription complex, subunit 8

AAH17366

PSFEp758E0524

yes, none

DQ000523

36,354

A, 24

9453

GGPS1, geranylgeranyl diphosphate synthase 1

AAH05252

PSFEp250E052

partly, none

37,795

D, 23

9465

AKAP7, A kinase (PRKA) anchor protein 7

AAC39715

PSFEp758E0415

no

34,000

A, 1

9796

PHYHIP, phytanoyl-CoA hydroxylase interacting protein

BAA13402

PSFEp758C1124

yes, T806C

DQ000530

40,497

A, 29

10000

AKT3, v-akt murine thymoma viral oncogene homolog 3

CAB55977

PSFEp250B063

yes, none

56,516

E, 20

10063

COX17, COX17 homolog, cytochrome c oxidase assembly protein (yeast)

AAA98114

PSFEp758D0723

yes, none

DQ000516

8,182

B, 3

10094

ARPC3, actin related protein 2/3 complex, subunit 3

AAB64191

PSFEp758G0811

yes, none

DQ000507

23,047

D, 7

10169

SERF2, small EDRK-rich factor 2

AAC63516

PSFEp250A057

no

9,821

C, 23

10228

STX6, syntaxin 6

AAH09944

PSFEp758G0526

yes, none

DQ000509

32,100

B, 7

10247

HRSP12, heat-responsive protein 12 (14.5 kDa translational inhibitor protein, p14.5)

CAA64670

PSFEp758H0822

yes, none

DQ000518

15,760

D, 12

10290

APEG1, aortic preferentially expressed protein 1

AAH06346

PSFEp250B082

yes, none

DQ000543

15,614

E, 18

10539

TXNL2, thioredoxin-like 2

AAH05289

PSFEp250A022

partly, none

40,357

C, 26

10588

MTHFS, 5,10-methenyltetrahydrofolate synthetase

AAC41945

PSFEp758B0824

no

24,522

D, 15

10589

DRAP1, DR1-associated protein 1 (negative cofactor 2 alpha)

AAH10025

PSFEp250C042

yes, none

DQ000542

25,273

E, 3

10598

AHSA1, AHA1, activator of heat shock 90 kDa protein ATPase homolog 1 (yeast)

AAD09623

PSFEp250B091

no

41,199

C, 15

10606

PAICS, phosphoribosylaminoimidazole carboxylase

AAH19255

PSFEp758G0226

partly, none

50,005

A, 5

10842

C7orf16, chromosome 7 open reading frame 16

AAF03537

PSFEp758F0923

no

19,132

B, 2

10856

RUVBL2, RuvB-like 2 (E. coli)

AAH04531

PSFEp250C072

partly, none

54,083

D, 25

10912

GADD45G, growth arrest and DNA-damage-inducible, gamma

AAC83329

PSFEp758F0111

yes, none

DQ000504

19,621

C, 4

10933

MORF4L1, mortality factor 4 like 1

AAH22845

PSFEp250G051

partly, none

40,155

C, 10

10963

STIP1, stress-induced-phosphoprotein 1

AAA58682

PSFEp250A012

partly, A86C

65,566

C, 28

11140

CDC37, CDC37 cell division cycle 37 homolog (S. cerevisiae)

AAH08793

PSFEp250E042

partly, none

47,394

D, 28

11316

COPE, coatomer protein complex, subunit epsilon

AAH07250

PSFEp758G1126

yes, none

DQ000510

37,406

B, 9

11333

PDAP1, PDGFA associated protein 1

AAH07873

PSFEp250A073

yes, none

DQ000554

23,553

D, 30

11337

GABARAP, GABA(A) receptor-associated protein

AAD02337

PSFEp758H0922

no

15,185

D, 10

11344

PTK9L, PTK9L protein tyrosine kinase 9-like (A6-related protein)

N P_009215

PSFEp758A0127

yes, none

DQ000525

42,473

E, 13

22818

COPZ1, coatomer protein complex, subunit zeta 1

AAD34115

PSFEp758A0812

yes, none

DQ000497

22,698

D, 3

22919

MAPRE1, microtubule-associated protein, RP/EB family, member 1

CAB53072

PSFEp250C112

yes, none

DQ000557

32,923

D, 21

22931

RAB18, RAB18, member RAS oncogene family

CAB66668

PSFEp250C118

no

25,900

B, 27

23589

CARHSP1, calcium regulated heat stable protein 1

AAD25021

PSFEp778D072

no

40,934

25842

ASF1A, ASF1 anti-silencing function 1 homolog A (S. cerevisiae)

AAD34093

PSFEp758E1224

yes, none

DQ000532

25,891

E, 17

25843

PREI3, preimplantation protein 3

AAD34090

PSFEp758B0812

yes, none

DQ000500

28,532

C, 2

25996

DKFZP566E144, small fragment nuclease

AAD34109

PSFEp758G0423

yes, none

DQ000520

25,021

D, 13

26289

AK5, adenylate kinase 5

AAH12467

PSFEp250G042

yes, 3 bp insertion at 3' end

DQ000558

24,897

E, 14

26353

HSPB8, heat shock 22 kDa protein 8

CAB66870

PSFEp250G125

yes, none

DQ000565

24,527

B, 16

27095

TRAPPC3, trafficking protein particle complex 3

AAB96936

PSFEp758A0513

yes, none

DQ000502

22,774

C, 3

27249

C2orf25, chromosome 2 open reading frame 25

AAD20048

PSFEp758D1124

no

35,864

A, 22

27335

eIF3k, eukaryotic translation initiation factor 3 subunit 12

BAA76626

PSFEp758D0923

no

26,326

D, 8

27430

MAT2B, methionine adenosyltransferase II, beta

CAB66599

PSFEp250A114

yes, none

DQ000575

40,476

B, 21

28970

PTD012, PTD012

CAB66540

PSFEp250B014

yes, none

DQ000586

38,042

E, 24

29789

PTD004, GTP-binding protein PTD004

CAB66481

PSFEp250H073

yes, none

DQ000564

47,609

B, 18

30819

KCNIP2, Kv channel interacting protein 2

CAB66656

PSFEp250G064

yes, none

DQ000562

28,964

E, 5

51001

CGI-12, CGI-12

AAH12995

PSFEp250B092

yes, none

DQ000545

40,832

C, 8

51076

CUTC, cutC copper transporter homolog (E. coli), CGI-32

AAH21105

PSFEp758E1112

yes, none

DQ000505

31,811

C, 5

51078

THAP4, THAP domain containing 4

AAD27745

PSFEp250H116

no

21,550

C, 7

51155

HN1, hematological and neurological expressed 1

AAH01420

PSFEp758G0126

yes, 3 bp deletion at 5' end, G457A

DQ000508

18,937

C, 6

51160

VPS28, vacuolar protein sorting 28 (yeast)

AAF00499

PSFEp758C0323

yes, none

DQ000513

26,692

B, 14

51335

NEUGRIN, mesenchymal stem cell protein DSC92

CAD39160

PSFEp250B084

yes, none

DQ000566

27,342

B, 28

51397

COMMD10, COMM domain containing 10

AAD44489

PSFEp758H0811

yes, none

DQ000506

25,466

D, 5

51433

ANAPC5, anaphase promoting complex subunit 5

BAA76629

PSFEp758E0214

no

47,174

B, 8

51451

LCMT1, leucine carboxyl methyltransferase 1

AAH01214

PSFEp758H0126

partly, none

41,303

B, 11

51534

C6orf55, chromosome 6 open reading frame 55

AAF76210

PSFEp758H0426

partly, none

41,303

B, 13

51629

CGI-69, CGI-69

AAD34064

PSFEp758D0316

no

63,564

B, 6

51678

MPP6, membrane protein, palmitoylated 6

CAB66770

PSFEp250E023

yes, none

DQ000583

64,044

E, 27

54816

SUHW4, suppressor of hairy wing homolog 4 (Drosophila)

CAB66569

PSFEp250G074

yes, none

DQ000587

27,032

E, 22

55255

WDR41, WD repeat domain 41

CAD38853

PSFEp250E105

yes, none

DQ000563

26,313

55276

PGM2, phosphoglucomutase 2

CAB66640

PSFEp250B113

partly, none

71,239

B, 26

56681

SARA1, SAR1a gene homolog 1 (S. cerevisiae)

CAB66658

PSFEp250G115

yes, none

DQ000570

25,290

B, 17

56911

C21orf7, chromosome 21 open reading frame 7

CAD28500

PSFEp250B086

yes, none

DQ000571

19,032

E, 6

57019

LOC57019, cytokine induced apoptosis inhibitor 1

AAC24311

PSFEp758E0424

yes, none

DQ000534

36,506

E, 21

58485

TRAPPC1, trafficking protein particle complex 1

AAD44697

PSFEp250D071

yes, T350C

DQ000537

19,754

E, 1

64284

RAB17, RAB17, member RAS oncogene family

CAB66580

PSFEp250E095

yes, none

DQ000572

26,398

A, 6

79632

C6orf60, chromosome 6 open reading frame 60

CAB66701

PSFEp250B044

yes, none

DQ000568

34,217

B, 20

79666

PLEKHF2, pleckstrin homology domain containing, family F member 2

CAD39132

PSFEp250D054

yes, A271G

DQ000581

30,721

A, 9

79791

FBXO31, F-box protein 31

CAB66696

PSFEp250F085

yes, none

DQ000585

18,588

E, 12

80347

COASY, Coenzyme A synthase

AAF87955

PSFEp250A053

yes, none

DQ000551

33,147

C, 29

80895

ILKAP, integrin-linked kinase-associated serine/threonine phosphatase 2C

CAB66784

PSFEp250D083

yes, none

DQ000569

45,832

B, 19

81876

RAB1B, RAB1B, member RAS oncogene family

CAB66570

PSFEp250C128

no

25,094

A, 12

81889

DKFZP566J2046, fumarylacetoacetate hydrolase domain containing 1

CAB66654

PSFEp250B074

yes, none

DQ000567

27,766

B, 24

83538

DKFZP434H0115, hypothetical protein DKFZp434H0115

CAB66694

PSFEp250G093

partly, none

79,584

E, 11

83543

C9orf58, chromosome 9 open reading frame 58

CAB66501

PSFEp250B085

yes, none

DQ000573

19,990

B, 25

83667

SESN2, sestrin 2

CAB66486

PSFEp250F043

yes, none

DQ000576

57,420

E, 7

84072

NOHMA, HORMA domain containing protein

CAB66689

PSFEp250F083

yes, none

DQ000561

47,343

E, 4

84324

CIP29, cytokine induced protein 29 kDa

CAC37950

PSFEp758H1026

yes, none

DQ000512

26,594

A, 2

84457

PHYHIPL, phytanoyl-CoA hydroxylase interacting protein-like

CAD39006

PSFEp250A084

yes, none

DQ000579

45,425

E, 10

84557

MAP1LC3A, microtubule-associated protein 1 light chain 3 alpha

CAD38714

PSFEp250E106

yes, none

DQ000584

17,194

E, 26

91603

MGC20398, hypothetical protein MGC20398

BAB70992

PSFEp758H0526

yes, none

DQ000511

44,915

B, 10

94240

EPSTI1, epithelial stromal interaction 1 (breast)

CAD38599

PSFEp250C015

yes, none

DQ000580

25,527

A, 11

112611

RWDD2, RWD domain containing 2

CAB52345

PSFEp758A1024

partly, T709C

35,159

B, 5

118812

C10orf83, chromosome 10 open reading frame 83

CAD38849

PSFEp250H085

yes, none

DQ000574

19,158

B, 23

122060

FLJ30046, hypothetical protein FLJ30046

CAD38891

PSFEp250E015

yes, none

DQ000577

23,468

E, 8

136319

MTPN, myotrophin

CAD38909

PSFEp250D016

yes, none

DQ000582

15,817

A, 7

140856

C20orf79, chromosome 20 open reading frame 79

CAB56175

PSFEp758G0224

yes, G258T

DQ000527

20,585

A, 19