Table 2 The top ten gene ontology (GO) terms identified within four pairwise comparisons
Comparison | Regulation | GO accession | GO term | n | % | p-value |
|---|---|---|---|---|---|---|
MA-R4 xylose/glucose (C1) | Up | GO:0050896 | Response to stimulus | 174 | 67.4 | 5.60E-06 |
GO:0006950 | Response to stress | 123 | 47.7 | 6.50E-05 | ||
GO:0042221 | Response to chemical stimulus | 95 | 36.8 | 1.36E-03 | ||
GO:0016491 | Oxidoreductase activity | 79 | 30.6 | 1.14E-06 | ||
GO:0006091 | Generation of precursor metabolites and energy | 57 | 22.1 | 4.38E-05 | ||
Down | GO:0044424 | Intracellular part | 656 | 95.8 | 6.83E-04 | |
GO:0005737 | Cytoplasm | 500 | 73.0 | 5.16E-06 | ||
GO:0009987 | Cellular process | 480 | 70.1 | 1.99E-06 | ||
GO:0043229 | Intracellular organelle | 410 | 59.9 | 5.18E-03 | ||
GO:0008152 | Metabolic process | 390 | 56.9 | 3.36E-09 | ||
GO:0044237 | Cellular metabolic process | 390 | 56.9 | 1.91E-10 | ||
GO:0044238 | Primary metabolic process | 374 | 54.6 | 3.26E-10 | ||
GO:0043170 | Macromolecule metabolic process | 321 | 46.9 | 1.52E-07 | ||
GO:0043283 | Biopolymer metabolic process | 321 | 46.9 | 7.22E-07 | ||
GO:0006996 | Organelle organization | 263 | 38.4 | 1.94E-08 | ||
MA-B4 xylose/glucose (C2) | Up | GO:0042221 | Response to chemical stimulus | 105 | 40.9 | 3.14E-08 |
GO:0016491 | Oxidoreductase activity | 93 | 36.2 | 2.78E-08 | ||
GO:0005975 | Carbohydrate metabolic process | 76 | 29.6 | 3.14E-08 | ||
GO:0006091 | Generation of precursor metabolites and energy | 61 | 23.7 | 4.64E-08 | ||
Down | GO:0044424 | Intracellular part | 852 | 95.9 | 1.17E-13 | |
GO:0044464 | Cell part | 611 | 68.8 | 6.56E-11 | ||
GO:0009987 | Cellular process | 611 | 68.8 | 4.06E-14 | ||
GO:0005737 | Cytoplasm | 609 | 68.6 | 6.14E-06 | ||
GO:0043229 | Intracellular organelle | 534 | 60.1 | 3.13E-05 | ||
GO:0008152 | Metabolic process | 474 | 53.4 | 2.14E-11 | ||
GO:0044237 | Cellular metabolic process | 474 | 53.4 | 8.13E-20 | ||
GO:0044238 | Primary metabolic process | 457 | 51.5 | 4.88E-12 | ||
GO:0005634 | Nucleus | 404 | 45.5 | 2.87E-03 | ||
GO:0043170 | Macromolecule metabolic process | 382 | 43.0 | 1.34E-07 | ||
Xylose MA-R4/MA-B4 (C3) | Up | GO:0006520 | Cellular amino acid metabolic process | 26 | 100 | 3.73E-04 |
Down | ND | ND | ND | ND | ND | |
Glucose MA-R4/MA-B4 (C4) | Up | GO:0016491 | Oxidoreductase activity | 33 | 61.1 | 2.54E-05 |
GO:0006629 | Lipid metabolic process | 32 | 59.3 | 2.54E-05 | ||
Down | ND | ND | ND | ND | ND |