Table 1 Adaptive laboratory evolution experiments with bacteria
From: Adaptive laboratory evolution – principles and applications for biotechnology
Species, Strain | Environment | Selection time | Reference |
|---|---|---|---|
Nutrient | |||
E. coli REL606 | DM minimal medium, glucose | > 50 000 generations | |
E. coli MG1655 | glycerol-limited chemostat | 217 generations | Weikert et al. [50] |
E. coli | glucose- limited chemostat | 280 generations | Notley-McRobb and Ferenci [49] |
E. coli MG1655 | M9 minimal medium, glycerol | 700 generations | Ibarra et al. [65] |
E. coli MG1655 | minimal medium lactate or glycerol | >1000 and > 600 generations | Fong et al. [66] |
E. coli MG1655 | M9 minimal medium, L-lactate | 900 generations | Hua et al. [67] |
E. coli MG1655 | M9 minimal medium, lactose | 500 generations | Dekel and Alon [68] |
E. coli MG1655 | glucose minimal medium | 25 days | Conrad et al. [69] |
E. coli MG1655 ∆pgi | M9 minimal medium, glucose | 50 days | Charusanti et al. [70] |
E. coli MG1655 | M9 minimal glycerol + 1,2 propanediol | 700 generation | Lee et al. [71] |
E. coli | chemostat minimal medium | 37 days | Wang et al. [46] |
phosphate limitation | |||
T. fusca | Hagerdhal medium, glucose, cellobiose | 220-284 generations | Deng and Fong [72] |
L. lactis KF147 | milk | 1000 generations | Bachmann et al. [73] |
G. sulfurreducens | lactate | nd | Summers et al. [74] |
C. tyrobutyricum ATCC 25755 | repeated batch fermentations, glucose | 130 days | Jiang et al. [75] |
E. coli REL606 | DM minimal medium, lactose | 2000 generations | Quan et al. [76] |
E. coli B | LB xylose, lactate production | 3 month | Zhao et al. [77] |
Environmental stress | |||
E. coli | high temperature (41.5°C) | 2000 generations | Rhiele et a l. [78] |
E. coli | UV light | 80 UV light cycles | Alcantara-Diaz et al. [79] |
E.coli | Freeze-thaw | 150 cycles | |
E. coli ∆rpoS | osmotic stress | nd | Stoebel et al. [82] |
E. coli | LB medium heat stress 48.5°C | 620 generations | Rudolph et al. [83] |
E. coli MG1655 | rich medium , 7% (v/v) ethanol | 30 -160 generations | Goodarzi et al. [84] |
E. coli W3110 | M9 minimal medium, 5% (v/v) ethanol | 1000 generations | Horinouchi et al. [85] |
E.coli | LB medium 4 – 8 g L-1 isobutanol | 45 transfers | Atsumi et al. [86] |
E. coli EcNR1 | M9 minimal medium, 0.75% (v/v) isobutanol | 500 generations | Minty et al. [87] |
Bacillus boroniphilus | TSB medium, 0.055 – 0.3 M H 3 BO 3 | 50 transfers | Sen et al. [88] |
E.coli B | Davis minimal medium, 42.2°C | 2000 generations | Tenaillon et al. [89] |
E. coli MG1655 | LB medium temperature stress (up to 48°C) | 8 months | Blaby et al. [90] |
E. coli K-12 | M9 medium, glucose,chemostat, n -butanol | > 200 generations | Reyes et al. [91] |
E. coli MG1655 | M9 minimal medium, low pH, n -butanol, H 2 O 2 , high salt | 500 generations | Dragosits et al. [63] |
Miscellaneous | |||
S. clavuligerus 27064 | TSB + MRSA N315 | nd | Charusanti et al. [55] |
G. oxydans DSM2343 | glycerol, increased DHA production | 25-50 transfers | Lu et al. [92] |