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Table 3 Genes differentially expressed of the PHA metabolic pathway within nitrogen (N) or carbon-nitrogen (C-N) limited cultures relative to carbon limited chemostat cultures

From: The metabolic response of P. putida KT2442 producing high levels of polyhydroxyalkanoate under single- and multiple-nutrient-limited growth: Highlights from a multi-level omics approach

Gene name

Locus tag

Description

Fold change

   

N

C-N

phaI ¥

PP5008

PHA granule-associated

6.1

2.5

phaF

PP5007

PHA granule-associated

3.1*

2.3

phaC1

PP5003

PHA polymerase

3.4*

1.0

phaC2

PP5005

PHA polymerase

1.2

1.1

phaZ

PP5004

PHA depolymerase

2.1*

1.3

phaD

PP5006

Transcriptional regulator

1.2

1.3

phaJ

PP4552

Enoyl-CoA hydratase

1.5

1.6

phaG

PP1408

Acyl-transferase

3.3*

2.2

  1. * 0.1 > P-value > 0.05
  2. ¥ Bold font indicates matching gene expression of N vs. C and CN vs. C