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Table 3 Results of protein identification in the SDS-PAGE in correspondence to the active bands including as significative only proteins identified with at least two peptides

From: Cloning and recombinant expression of a cellulase from the cellulolytic strain Streptomyces sp. G12 isolated from compost

Identified protein (Accession number)

Total scorea

Matched sequence (individual ion score)

Sequence coverage (%)

Endoglucanase I (gi|544459)

342

LPILVAYNIYNR (44)

19%

  

AAAINASIANTPMAR (66)

 
  

YGYTKPFVVDTSR (50)

 
  

QAPNTWVYMDAGNPR (92)

 

beta-1,4-endoglucanase (gi|224555766)

418

TEIMIWFNR (25)

41%

  

VGPIQPIGSQVGTADVAGR (91)

 
  

WGTSATQCVTATDSGFR (27)

 
  

TDGVNRTEIMIWFNR (43)

 
  

SYPSVFNGCHYTNCSPGTALPAR (33)

 
  

WGTSATQCVTATDSGFRVTQADGSVPTDGAPK (37)

 
  

LGFTLPSGQSVVHAWNASVAPSSGAVTATGPADSPR (49)

 
  

INGISSAPSSISYGYVDNAVYNASYDIWLDPTPR (49)

 
  1. a Ions score is -10*Log(P), where P is the probability that the observed match is a random event. Individual ions scores > 48 indicate identity or extensive homology (p<0.05). Protein scores are derived from ions scores as a non-probabilistic basis for ranking protein hits. (http://www.matrixscience.com/help/interpretation_help.html).