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Table 1 CAZyme genes of T. reesei

From: Re-annotation of the CAZy genes of Trichoderma reesei and transcription in the presence of lignocellulosic substrates

Gene IDa

Nameb

CAZyc

Annotation

CBM moduled

Refe

Prot. clusterf

Functional subgroupg

A.

107268

 

CE1

Cand. S-formylglutathione hydrolase

 

This study

2607

2607a

72072

 

CE1

Cand. esterase

 

[38]

6197

6197a

107850

 

CE1

Cand. esterase

 

[47]

6197

6197a

44366

 

CE3

Cand. esterase

 

This study

2806

2806a

70021

 

CE3

Cand. acetyl xylan esterase

 

[38]

2806

2806a

41248

 

CE3

Cand. acetyl xylan esterase

 

[47]

6113

6113a

107488

 

CE3

Cand. esterase

 

This study

6113

6113a

31227

 

CE3

Cand. esterase/suberinase

 

This study

13836

13836a

67678

 

CE4

Cand. chitin deacetylase

CBM18

[37]

302

302a

69490

 

CE4

Cand. chitin deacetylase

CBM18

[37]

302

302b

65215

 

CE4

Cand. imidase

 

[38]

2445

2445a

105072

 

CE4

Cand. polysaccharide deacetylase

 

[38], A

4972

4972a

60489

 

CE5

Cand. cutinase

 

[38]

540

540a

44214

axe2

CE5

Cand. acetyl xylan esterase

 

[16]

865

865a

54219

 

CE5

Cand. acetyl xylan esterase

 

[31]

865

865b

73632

axe1

CE5

Acetyl xylan esterase

CBM1

[28]

865

865b

79671

 

CE9

Cand. N-acetyl-glucosamine-6-phosphate deacetylase

 

[38]

2516

2516a

3101

 

CE14

Cand. N-acetylglucosaminylphosphatidylinositol de-N-acetylase

 

This study

2076

2076a

58550

 

CE14

Cand. N-acetylglucosaminylphosphatidylinositol de-N-acetylase

 

This study

7267

7267a

123940

cip2

CE15

Glucuronoyl esterase

 

[16]

4243

4243a

103825

 

CE16

Cand. acetyl esterase

 

This study

3851

3851a

121418

aes1

CE16

Acetyl esterase

 

[34]

3851

3851a

22197

cel1b

GH1

Cand. β-glucosidase

 

[16]

662

662a

120749

bgl2/cel1a

GH1

β-glucosidase

 

[21]

662

662b

5836

 

GH2

Cand. β-mannosidase

 

[38]

609

609a

59689

 

GH2

Cand. β-mannosidase

 

[38]

609

609a

69245

 

GH2

Cand. β-mannosidase

 

[38]

609

609a

62166

 

GH2

Cand. β-mannosidase

 

[38]

609

609b

57857

 

GH2

Cand. β-mannosidase

 

[38], A

609

609c

77299

gls93

GH2

Exo-β-D-glucosaminidase

 

[83]

2917

2917a

76852

 

GH2

Cand. β-galactosidase/β-glucuronidase

 

[38], A

4433

4433a

102909

 

GH2

Cand. GH2 protein

 

This study

125855

125855a

121735

cel3b

GH3

Cand. β-glucosidase

 

[16]

110

110a

47268

bgl3i

GH3

Cand. β-glucosidase

 

[62]

110

110b

66832

 

GH3

Cand. β-glucosidase

 

[37]

110

110c

76227

cel3e

GH3

Cand. β-glucosidase

 

[16]

110

110d

76672

bgl1/cel3a

GH3

β-glucosidase

 

[22]

110

110e

104797

bgl3j

GH3

Cand. β-glucosidase

 

[62]

110

110f

46816

cel3d

GH3

Cand. β-glucosidase

 

[16]

132

132a

82227

cel3c

GH3

Cand. β-glucosidase

 

[16]

132

132b

108671

bgl3f

GH3

Cand. β-glucosidase/glucan 1,4-β-glucosidase

 

[62], A

132

132c

69557

 

GH3

Cand. β-N-acetylglucosaminidase

 

[38], A

2317

2317a

79669

 

GH3

Cand. β-N-acetylglucosaminidase

 

[38], A

2317

2317b

58450

xyl3b

GH3

Cand. β-xylosidase

 

[62]

3274

3274a

121127

bxl1

GH3

β-xylosidase

 

[30]

3274

3274b

64375

 

GH5

Cand. glucan β-1,3-glucosidase

 

[38]

173

173a

64906

 

GH5

Cand. endo-β-1,6-glucanase

 

[38]

173

173b

77506

cel5d

GH5

Cand. β-glycosidase

 

[62]

732

732a

82616

cel5b

GH5

Cand. membrane bound endoglucanase

 

[16]

778

778a

120312

egl2/cel5a

GH5

Endo-β-1,4-glucanase

CBM1

[15]

778

778a

56996

man1

GH5

β-Mannanase

CBM1

[27]

1854

1854a

53731

 

GH5

Cand. endo-β-1,4-glucanase

 

[37]

8196

8196a

71554

 

GH5

Cand. β-1,3-mannanase/endo-β-1,4-mannosidase

 

[38], A

16589

16589a

72567

cbh2/cel6a

GH6

Cellobiohydrolase

CBM1

[10]

2966

2966a

122081

egl1/cel7b

GH7

Endo-β-1,4-glucanase

CBM1

[11]

470

470a

123989

cbh1/cel7a

GH7

Cellobiohydrolase

CBM1

[8]

470

470b

120229

xyn3

GH10

Endo-β-1,4-xylanase

 

[26]

429

429a

74223

xyn1

GH11

Endo-β-1,4-xylanase

 

[24]

643

643a

112392

xyn5

GH11

Cand. endo-β-1,4-xylanase

 

[58]

643

643a

123818

xyn2

GH11

Endo-β-1,4-xylanase

 

[24]

643

643b

123232

egl3/cel12a

GH12

Endo-β-1,4-glucanase

 

[12]

1708

1708a

77284

 

GH12

Cand. endo-β-1,4-glucanase

 

[38], A

7857

7857a

59578

 

GH13

Cand. α-glucosidase

 

[38]

316

316a

108477

 

GH13

Cand. α-glucosidase/oligo α-glucosidase

 

[38]

316

316b

105956

 

GH13

Cand. α-amylase

 

[38]

394

394a

57128

 

GH13

Cand. glycogen debranching enzyme

 

[38]

1465

1465a

123368

 

GH13

Cand. 1,4-α-glucan branching enzyme

 

[38]

1522

1522a

B.

1885

gla

GH15

Glucoamylase

 

[84]

608

608a

65333

 

GH15

Cand. α-glycosidase (Glucoamylase and related glycosyl hydrolases)

 

[38], A

3601

3601a

121294

 

GH16

Cand. glucan endo-1,3(4)-β-D-glucosidase

 

[38]

169

169a

38536

 

GH16

Cand. glucan endo-1,3(4)-β-D-glucosidase

 

[38]

169

169b

49274

 

GH16

Cand. glucan endo-1,3(4)-β-D-glucosidase

 

[37]

169

169c

55886

 

GH16

Cand. glucan endo-1,3(4)-β-D-glucosidase

 

[38], A

169

169c

41768

 

GH16

Cand. cell wall glucanosyltransferase

 

[37], A

248

248

58239

 

GH16

Cand. cell wall glucanosyltransferase

 

[37], A

248

248a

66843

 

GH16

Cand. cell wall glucanosyltransferase

 

[47], A

248

248b

65406

 

GH16

Cand. cell wall glucanosyltransferase

 

[37], A

248

248c

50215

 

GH16

Cand. endo-1,3-β-D-glucosidase/1,3-glucan binding protein

 

[38], A

1176

1176a

76266

 

GH16

Cand. cell wall glucanosyltransferase

CBM18

[38], A

2089

2089a

122511

 

GH16

Cand. glucan endo-1,3(4)-β-D-glucosidase

 

[38]

2996

2996a

123726

 

GH16

Cand. glucan endo-1,3(4)-β-D-glucosidase

 

[38]

2996

2996a

39755

 

GH16

Cand. glucan endo-1,3(4)-β-D-glucosidase

 

[38], A

3545

3545a

70542

 

GH16

Cand. b-glycosidase (endo-beta-1,3(4)-β-D-glucanase)

 

[38], A

6108

6108a

71399

 

GH16

Cand. endo-1,3-β-glucanase

 

[38], A

9096

9096a

73101

 

GH16

Cand. glucan endo-1,3-1,4-β-D-glucosidase

 

[38], A

125817

125817a

49193

 

GH17

Cand. glucan 1,3-β-glucosidase

 

[38], A

536

536a

76700

 

GH17

Cand. glucan 1,3 β-glucosidase/ glucan endo-1,3-β-glucosidase

 

[38], A

2531

2531a

39942

 

GH17

Cand. glucan endo-1,3-β-glucosidase

 

[38]

2892

2892a

66792

 

GH17

Cand. glucan endo-1,3-β-glucosidase

 

[38], A

2892

2892b

59082

chi18-2

GH18

Cand. chitinase

 

[59]

115

115a

62704

chi18-3

GH18

Cand. chitinase

 

[59]

115

115a

2735

chi18-6

GH18

Cand. chitinase

 

[59]

115

115b

80833

chi46

GH18

Chitinase

 

[85]

115

115b

81598

chi18-7

GH18

Cand. chitinase

 

[59]

115

115c

56894

chi18-10

GH18

Cand. chitinase

CBM18

[59]

200

200a

108346

chi18-8

GH18

Cand. chitinase

CBM18

[59]

200

200b

53949

chi18-1

GH18

Cand. chitinase

CBM18

[59]

200

200c

72339

chi18-9

GH18

Cand. chitinase

CBM18

[59]

200

200d

119859

chi18-13

GH18

Cand. chitinase

 

[59]

410

410

43873

chi18-12

GH18

Cand. chitinase

 

[59]

410

410a

110317

chi18-17

GH18

Cand. chitinase

CBM1

[59]

410

410a

68347

chi18-16

GH18

Cand. chitinase

CBM1

[59]

410

410b

124043

chi18-14

GH18

Cand. chitinase

CBM1

[59]

410

410b

66041

chi18-18

GH18

Cand. chitinase

 

[59]

410

410c

65162

Endo T

GH18

Endo-N-acetyl-β-D-glucosaminidase

 

[86]

3445

3445a

121355

chi18-rel2

GH18

Cand. Endo-N-acetyl-β-D-glucosaminidase

 

[38], A

3445

3445a

56448

chi18-11

GH18

Cand. chitinase

 

[59]

3553

3553a

62645

chi18-4

GH18

Cand. chitinase

 

[59]

3553

3553a

59791

chi18-15

GH18

Cand. chitinase

 

[59]

125792

125792a

21725

 

GH20

Cand. exochitinase

 

[38]

1025

1025a

23346

nag2

GH20

Cand. exochitinase

 

[38]

1025

1025a

105931

 

GH20

Cand. N-acetyl-β-hexosaminidase

 

[38]

4197

4197a

109278

 

GH24

Cand. lysozyme

 

[38]

3728

3728a

103458

 

GH25

Cand. N,O-diacetylmuramidase

 

[38]

5086

5086a

55999

 

GH27

Cand. α-galactosidase

 

[58]

617

617a

65986

 

GH27

Cand. α-galactosidase

 

[38]

617

617a

72632

agl1

GH27

α-galactosidase

 

[32]

617

617b

27219

 

GH27

Cand. α-galactosidase

 

[38]

12458

12458a

27259

 

GH27

Cand. α-galactosidase

 

[38]

12458

12458a

59391

 

GH27

Cand. α-galactosidase

 

[38]

12458

12458a

72704

agl3

GH27

α-galactosidase

 

[32]

12458

12458a

75015

 

GH27

Cand. α-galactosidase

 

[38]

12458

12458a

70186

 

GH28

Cand. polygalacturonase/xylogalacturonan hydrolase

 

[38]

295

295a

112140

pgx1

GH28

Cand. exo-polygalacturonase

 

[58]

295

295b

122780

rgx1

GH28

Cand. exo-rhamnogalacturonase

 

[58]

295

295c

103049

 

GH28

Cand. endo-polygalacturonase

 

[38]

870

870a

69276

 

GH30

Cand. endo-β-1,4-xylanase

 

[38]

6176

6176a

111849

xyn4

GH30

Endo-β-1,4-xylanase

 

[87]

6176

6176a

3094

 

GH30

Cand. glucan endo 1,6-β-glucanase

 

[38]

7813

7813a

69736

 

GH30

Cand. glucan endo 1,6-β-glucanase

 

[38]

7813

7813a

110894

 

GH30

Cand. endo-β-1,6-galactanase

 

[38]

16621

16621a

82235

 

GH31

Cand. α-glucosidase

 

[38]

594

594a

121351

gls2

GH31

Glucosidase II alpha subunit

 

[88]

1379

1379a

69944

 

GH31

Cand. α-xylosidase/α-glucosidase

 

[38]

3846

3846a

60085

 

GH31

Cand. α-glucosidase

 

[38]

5176

5176a

80240

bga1

GH35

β-galactosidase

 

[89]

675

675a

64827

 

GH36

Cand. raffinose synthase domain protein

 

[38], A

3772

3772a

124016

agl2

GH36

α-galactosidase

 

[32]

4771

4771a

120676

 

GH37

Cand. α,α-trehalase

 

[38]

769

769a

123226

 

GH37

Cand. α,α-trehalase

 

[38]

4723

4723a

3196

 

GH38

Cand. α-mannosidase

 

[38]

1337

1337a

73102

 

GH39

Cand. β-xylosidase

 

[38], A

4388

4388a

3739

 

GH43

Cand. β-xylosidase/α-L-arabinofuranosidase

 

[38]

586

586a

68064

 

GH43

Cand. β-xylosidase/α-L-arabinofuranosidase

 

[47]

7306

7306a

49976

egl5/cel45a

GH45

Endo-β-1,4-glucanase

CBM1

[14]

12601

12601a

C.

45717

mds1

GH47

α-1,2-mannosidase

 

[90]

70

70a

2662

 

GH47

Cand. α-1,2-mannosidase

 

[38]

70

70b

111953

 

GH47

Cand. α-1,2-mannosidase

 

[38]

70

70c

79960

 

GH47

Cand. α-1,2-mannosidase

 

[47]

70

70d

65380

 

GH47

Cand. α-1,2-mannosidase

 

[38]

70

70e

79044

 

GH47

Cand. α-1,2-mannosidase

 

[38]

70

70e

22252

 

GH47

Cand. α-1,2-mannosidase

 

[37]

70

70f

64285

 

GH47

Cand. α-mannosidase

 

[38]

1421

1421a

55319

abf3

GH54

Cand. α-L-arabinofuranosidase

CBM42

[31]

5126

5126a

123283

abf1

GH54

α-L-arabinofuranosidase I

CBM42

[30]

5126

5126a

121746

gluc78

GH55

Cand. exo-1,3-β-glucanase

 

[58]

235

235a

54242

 

GH55

Cand. β-1,3-glucanase

 

[38]

235

235b

70845

 

GH55

Cand. β-1,3-glucanase

 

[38]

235

235b

108776

 

GH55

Cand. β-1,3-glucanase

 

[38]

235

235b

56418

 

GH55

Cand. β-1,3-glucanase

 

[38]

235

235c

73248

 

GH55

Cand. exo-1,3-β-glucanase

 

[38]

235

235d

73643

egl4/cel61a

GH61

Cand. copper-dependent polysaccharide monooxygenase/endo-β-1,4-glucanase

CBM1

[13]

77

77a

120961

cel61b

GH61

Cand. copper-dependent polysaccharide monooxygenase

 

[16]

77

77b

22129

 

GH61

Cand. copper-dependent polysaccharide monooxygenase

 

[38]

515

515a

31447

 

GH61

Cand. copper-dependent polysaccharide monooxygenase

 

This study

515

515b

76065

 

GH61

Cand. copper-dependent polysaccharide monooxygenase

 

This study

515

515b

27554

 

GH61

Cand. copper-dependent polysaccharide monooxygenase

 

[31]

8230

8230a

76210

abf2

GH62

Cand. α-L-arabinofuranosidase

 

[16]

3103

3103a

22072

 

GH63

Cand. processing α-glucosidase

 

[38]

1244

1244a

75036

 

GH63

Cand. α-glucosidase

 

[38], A

2428

2428a

65137

 

GH64

Cand. endo-1,3-β-glucanase

 

[38]

3917

3917a

123639

 

GH64

Cand. endo-1,3-β-glucanase

 

[38]

3917

3917a

124175

 

GH64

Cand. endo-1,3-β-glucanase

 

[38]

3917

3917b

25224

 

GH65

Cand. α,α-trehalase

 

[38]

2891

2891a

123456

 

GH65

Cand. α,α-trehalase

 

[38]

2891

2891a

72526

glr1

GH67

α-Glucuronidase

 

[29]

5113

5113a

71532

 

GH71

Cand. α-1,3-glucanase

 

[37]

287

287a

108672

 

GH71

Cand. α-1,3-glucanase

CBM24

[38]

287

287b

120873

 

GH71

Cand. α-1,3-glucanase

CBM24

[38]

287

287b

73179

 

GH71

Cand. α-1,3-glucanase

 

[37]

287

287c

22914

 

GH72

Cand. β-1,3-glucanosyltransferase

CBM43

[38]

111

111a

82633

 

GH72

Cand. β-1,3-glucanosyltransferase

 

[37]

111

111a

77942

 

GH72

Cand. β-1,3-glucanosyltransferase

 

[38]

111

111b

78713

 

GH72

Cand. β-1,3-glucanosyltransferase

 

[47]

111

111c

123538

 

GH72

Cand. β-1,3-glucanosyltransferase

 

[38]

111

111d

49081

cel74a

GH74

Xyloglucanase

CBM1

[16]

4769

4769a

42152

 

GH75

Cand. chitosanase

 

[38]

3832

3832a

70341

 

GH75

Cand. chitosanase

 

[38]

3832

3832a

66789

 

GH75

Cand. chitosanase

 

[38]

3832

3832b

49409

 

GH76

Cand. α-1,6-mannanase

 

[38]

129

129a

67844

 

GH76

Cand. α-1,6-mannanase

 

[38]

129

129a

69123

 

GH76

Cand. α-1,6-mannanase

 

[38]

129

129b

122495

 

GH76

Cand. α-1,6-mannanase

 

[38]

129

129b

53542

 

GH76

Cand. α-1,6-mannanase

 

[38]

129

129c

55802

 

GH76

Cand. α-1,6-mannanase

 

[38]

129

129c

74807

 

GH76

Cand. α-1,6-mannanase

 

[47]

3765

3765a

27395

 

GH76

Cand. α-1,6-mannanase

 

[38]

4345

4345a

58887

 

GH78

Cand. α-L-rhamnosidase

 

[38]

3807

3807a

71394

 

GH79

Cand. β-glucuronidase

 

[38], A

5190

5190a

73005

 

GH79

Cand. β-glucuronidase

 

[38], A

5190

5190a

106575

 

GH79

Cand. β-glucuronidase

 

[38], A

5190

5190a

72568

 

GH79

Cand. β-glucuronidase

 

[37], A

5190

5190b

73256

 

GH81

Cand. endo-1,3-β-glucanase

 

[38]

722

722

79602

 

GH81

Cand. endo-1,3-β-glucanase

 

[38]

722

722a

58117

 

GH89

Cand. α-N-acetylglucosaminidase

 

[38]

6562

6562a

69700

 

GH89

Cand. α-N-acetylglucosaminidase

 

[38]

6562

6562a

74198

 

GH92

Cand. α-1,2-mannosidase

 

[38]

318

318a

111733

 

GH92

Cand. α-1,2-mannosidase

 

[38]

318

318a

79921

 

GH92

Cand. α-1,2-mannosidase

 

[38]

318

318b

60635

 

GH92

Cand. α-1,2-mannosidase

 

[38]

318

318c

55733

 

GH92

Cand. α-1,2-mannosidase

 

[38]

318

318d

57098

 

GH92

Cand. α-1,2-mannosidase

 

[47]

318

318e

69493

 

GH92

Cand. α-1,2-mannosidase

 

[38]

318

318f

72488

 

GH95

Cand. α-L-fucosidase

 

[38]

2951

2951

5807

 

GH95

Cand. α-L-fucosidase

 

[38]

2951

2951a

111138

 

GH95

Cand. α-L-fucosidase

 

[37]

2951

2951a

58802

 

GH95

Cand. α-L-fucosidase

 

[38]

2951

2951b

4221

 

GH105

Cand. rhamnogalacturonyl hydrolase

 

This study

4036

4036a

57179

 

GH105

Cand. rhamnogalacturonyl hydrolase

 

[37]

4065

4065a

79606

 

GH115

Cand. xylan-α-1,2-glucuronidase or α-(4-O-methyl)-glucuronidase

 

This study

3202

3202a

103033

 

PL7

Cand. alginate lyase

 

[38]

9526

9526a

110259

 

PL7

Cand. alginate lyase

 

[38]

9526

9526a

111245

 

PL8

Cand. chondroitin lyase

 

[38]

10699

10699a

53186

TrGl

PL20

Glucuronan hydrolase

 

[91]

5536

5536a

69189

 

PL20

Cand. endo-β-1,4-glucuronan lyase

 

This study

5536

5536a

108348

 

GH

-

  

10159

 

105288

 

GH

-

  

29033

 

121136

 

GH

-

  

29033

 
  1. Glycoside hydrolase, carbohydrate esterase (excluding CE10) and polysaccharide lyase genes of T. reesei, the annotation and functional diversification of the genes
  2. (a), gene identifier as in T. reesei v2.0 data base [38]; (b), name given to the gene in the publication/data base marked in the reference column; (c), family and class of the enzyme according to the CAZy classification [5]; (d), cellulose binding module present in the protein; (e), reference to previous studies or to T. reesei database versions 1.2 and 2.0.; (f), protein cluster the T. reesei protein was assigned to when the protein clusters were mapped to CAZy database by a blast search; (g), functional subgroups within the protein cluster determined according to phylogenetic analysis. A, a previous annotation has been specified/updated during this study.