Skip to main content

Table 2 Dataset used for the linear regression

From: Statistics-based model for prediction of chemical biosynthesis yield from Saccharomyces cerevisiae

Reference

Product

Yield

Primary

Step

Second

Step

OVE_C2

OVE_C3

KNO_C2

NUT_C2

INT_C2

CUL_C2

OXY_C2

[41]

(E, E, E)-Geranylgeraniol

0.00025

10

10

1

0

0

1

0

0

0

[41]

(E, E, E)-Geranylgeraniol

0.014

10

10

0

1

0

1

0

0

0

[41]

(E, E, E)-Geranylgeraniol

0.047

10

10

0

1

0

1

0

0

0

[41]

(E, E, E)-Geranylgeraniol

0.018

10

10

0

1

0

1

0

0

0

[41]

(E, E, E)-Geranylgeraniol

0.031

10

10

0

1

0

1

0

0

0

[41]

(E, E, E)-Geranylgeraniol

0.058

10

10

0

1

0

1

0

0

0

[41]

(E, E, E)-Geranylgeraniol

0.14

10

10

0

1

0

1

0

1

0

[42]

1,2-Propanediol

0.014

4

3

1

0

0

1

0

0

0

[43]

1,2-Propanediol

0.010

4

3

1

0

0

1

0

1

0

[43]

1,2-Propanediol

0.026

4

3

1

0

0

1

0

1

0

[44]

5-epi-aristolochene

0.010

10

9

1

0

1

1

0

0

0

[44]

5-epi-aristolochene

0.0090

10

9

1

0

1

1

0

0

0

[45]

Acetate

0.13

9

2

0

0

1

0

0

1

0

[46]

Acetate

0.015

9

2

0

0

1

0

0

1

0

[47]

Acetate

0.26

9

2

0

1

0

0

0

0

1

[48]

Amorphadiene

0.00049

12

9

1

0

0

0

0

0

0

[48]

Amorphadiene

0.0020

12

9

1

0

0

0

0

0

0

[48]

Amorphadiene

0.0040

12

9

1

0

1

0

0

0

0

[48]

Amorphadiene

0.011

12

9

1

0

1

0

0

0

0

[48]

Amorphadiene

0.016

12

9

0

1

1

0

0

0

0

[48]

Amorphadiene

0.016

12

9

0

1

1

0

0

0

0

[49]

Amorphadiene

0.0080

12

9

1

0

1

0

0

0

0

[49]

Amorphadiene

0.0090

12

9

0

1

1

0

0

0

0

[49]

Amorphadiene

0.011

12

9

0

1

1

0

0

0

0

[49]

Amorphadiene

0.013

12

9

0

1

1

0

0

0

0

[48]

Artemisinic acid

0.0030

12

10

0

1

1

0

0

0

0

[48]

Artemisinic acid

0.011

12

10

0

1

1

0

0

1

0

[50]

Cyanophycin

0.12

10(0)

2(1)

1

0

1

1

1

0

0

[50]

Cyanophycin

0.10

10(0)

2(1)

1

0

1

1

1

0

0

[50]

Cyanophycin

0.15

10(0)

2(1)

1

0

1

1

1

0

0

[51]

Dihydroxyacetone

0.0040

4

3

1

0

0

0

0

0

0

[51]

Dihydroxyacetone

0.034

4

3

1

0

1

0

0

0

0

[52]

D-Lactic acid

0.61

9

1

1

0

1

1

0

0

1

[53]

Dolichol

0.00010

10

11

0

0

0

1

0

0

0

[53]

Dolichol

0.00018

10

11

1

0

0

0

0

0

0

[53]

Ergosterol

0.00015

10

21

0

0

0

1

0

0

0

[53]

Ergosterol

0.00020

10

21

1

0

0

0

0

0

0

[20]

Ethanol

0.55

9

2

1

0

0

0

0

1

1

[20]

Ethanol

0.47

8

2

0

1

0

0

0

1

1

[54]

Ethanol

0.080

8

2

0

1

0

0

0

1

0

[54]

Ethanol

0.12

8

2

0

1

0

0

0

1

1

[54]

Ethanol

0.15

8

2

0

1

0

0

0

1

1

[55]

Ethanol

0.53

9

2

1

0

0

1

0

0

0

[55]

Ethanol

0.20

9

2

1

0

0

1

0

0

0

[55]

Ethanol

0.47

9

2

1

0

0

1

0

0

0

[55]

Ethanol

0.42

9

2

0

0

0

1

0

0

0

[55]

Ethanol

0.36

9

2

0

0

0

1

0

0

0

[46]

Ethanol

0.44

9

2

0

0

1

0

0

1

0

[46]

Ethanol

0.32

8

2

0

0

1

0

0

1

1

[56]

Ethanol

0.52

9

2

1

0

0

0

0

0

0

[47]

Ethanol

0.55

9

2

0

1

0

0

0

0

1

[47]

Ethanol

0.39

9

2

0

1

0

0

0

0

1

[47]

Ethanol

0.51

9

2

0

1

1

0

0

0

1

[57]

Ethylene*

0.00069

13

10

1

0

0

0

0

1

0

[44]

Farnesol

0.036

10

9

0

0

1

1

0

0

0

[58]

Flavanones

0.030

10(0)

14(3)

0

1

0

0

1

0

0

[58]

Flavanones

0.053

10(0)

14(3)

0

1

0

0

1

0

0

[59]

Formate

0.00024

6

7

0

0

1

0

0

0

0

[59]

Formate

0.00030

6

7

0

0

1

0

0

0

0

[60]

Geraniol

0.00011

10

8

1

0

0

0

0

0

0

[60]

Geraniol

0.00019

10

8

1

0

1

0

0

0

0

[60]

Geraniol

0.00019

10

8

1

0

1

0

0

0

0

[61]

Glycerol

0.12

4

2

1

0

0

0

0

1

0

[61]

Glycerol

0.12

4

2

1

0

0

0

0

1

0

[45]

Glycerol

0.41

4

2

1

0

1

0

0

1

0

[45]

Glycerol

0.45

4

2

1

0

1

0

0

1

0

[45]

Glycerol

0.45

4

2

1

0

1

0

0

0

0

[62]

Glycerol

0.49

4

2

0

0

1

1

0

1

0

[62]

Glycerol

0.41

4

2

0

0

1

1

0

1

0

[46]

Glycerol

0.050

4

2

0

0

1

0

0

1

0

[46]

Glycerol

0.037

2

4

0

0

1

0

0

1

1

[63]

Glycerol

0.45

4

2

0

0

1

0

0

1

0

[63]

Glycerol

0.54

4

2

1

0

1

0

0

1

0

[30]

Glycerol 3-phosphate

0.0010

4

1

1

0

1

0

0

0

1

[64]

Hydrocortisone

0.0020

10(0)

19(2)

1

0

0

1

1

0

0

[64]

Hydrocortisone

0.0020

10(0)

19(2)

1

0

1

1

1

0

0

[64]

Hydrocortisone

0.021

10(0)

19(2)

1

0

1

1

1

0

0

[64]

Hydrocortisone

0.026

10(0)

19(2)

1

0

1

1

1

0

0

[65]

Lactate

0.44

9

1

1

0

0

1

0

1

0

[66]

Lactate

0.21

9

1

1

0

0

0

0

1

0

[67]

L-Ascorbic acid

0.14

2(0)

8(2)

1

0

0

0

1

0

0

[67]

L-Ascorbic acid

0.066

2(0)

8(2)

1

0

0

0

1

0

0

[60]

Linalool

8.8 × 10-5

10

8

1

0

0

0

0

0

0

[60]

Linalool

2.3 × 10-5

10

8

1

0

1

0

0

0

0

[68]

L-Lactic Acid

0.65

9

1

1

0

1

1

0

0

0

[32]

Malate

0.28

11

0

0

1

0

0

0

0

0

[49]

Mevalonate

0.022

12

3

0

1

1

0

0

0

0

[49]

Mevalonate

0.022

12

3

0

1

1

0

0

0

0

[69]

Naringenin

0.0070

8(0)

15(3)

0

1

0

0

1

0

0

[69]

Naringenin

0.0020

8(0)

15(5)

0

1

0

0

1

0

0

[15]

Naringenin

0.00058

10

14

0

1

0

1

0

0

0

[70]

n-Butanol

0.00020

12

6

0

1

0

0

0

0

1

[69]

p-Coumaric Acid

0.033

8(0)

12(2)

0

1

0

0

1

0

0

[71]

p-Hydroxycinnamic acid

0.00020

8

12

1

0

0

0

0

0

0

[71]

p-Hydroxycinnamic acid

0.20

8(0)

12(2)

1

0

0

0

1

0

0

[15]

Pinocembrin

6.6 × 10-5

10

14

0

1

0

1

0

0

0

[72]

Poly[(R)-3-hydroxybutyrate]

0.00056

10

3

1

0

0

0

0

0

0

[72]

Poly[(R)-3-hydroxybutyrate]

0.003

10

3

1

0

0

0

0

0

0

[72]

Poly[(R)-3-hydroxybutyrate]

0.012

10

3

0

1

0

0

0

0

0

[72]

Poly[(R)-3-hydroxybutyrate]

0.00047

10

3

1

0

0

0

0

1

0

[72]

Poly[(R)-3-hydroxybutyrate]

0.0090

10

3

1

0

0

0

0

1

0

[72]

Poly[(R)-3-hydroxybutyrate]

0.018

10

3

0

1

0

0

0

1

0

[72]

Poly[(R)-3-hydroxybutyrate]

0.0010

10

3

0

1

0

0

0

1

1

[72]

Poly[(R)-3-hydroxybutyrate]

0.017

10

3

0

1

0

1

0

0

0

[44]

Premnaspirodiene

0.011

10

9

1

0

1

1

0

0

0

[44]

Premnaspirodiene

0.0090

10

9

1

0

1

1

0

0

0

[73]

Pyruvate

0.55

9

0

0

0

1

0

0

1

0

[46]

Pyruvate

0.0050

9

0

0

0

1

0

0

1

0

[74]

Reticuline

0.051

8(0)

16(3)

0

1

0

0

1

0

0

[75]

Ribitol

0.0020

5

2

0

0

1

0

0

0

0

[75]

Ribitol

0.027

5

2

1

0

1

0

0

0

0

[75]

Ribitol

0.017

5

2

1

0

1

0

0

0

0

[75]

Ribitol

0.021

5

2

1

0

1

0

0

0

0

[41]

Squalene

0.042

10

9

1

0

0

1

0

0

0

[76]

Taxadiene

7.7 × 10-5

12

8

0

1

0

1

0

0

0

[77]

Vanillin

0.0030

3

6

0

1

1

1

0

0

0

[75]

Xylitol

0.0070

5

2

1

0

1

0

0

0

0

[75]

Xylitol

0.014

5

2

1

0

1

0

0

0

0

[75]

Xylitol

0.014

5

2

1

0

1

0

0

0

0

[47]

Xylitol

0.27

5

2

0

1

0

0

0

0

1

[47]

Xylitol

0.29

5

2

0

1

1

0

0

0

1

[78]

β-carotene

4.5 × 10-7

10

14

1

0

0

0

0

0

0

[78]

β-carotene

2.9 × 10-6

10

14

0

1

0

0

0

0

0

[78]

β-carotene

0.00011

10

14

0

1

0

0

0

0

0

[78]

β-carotene

0.00036

10

14

0

1

0

0

0

0

0

[78]

β-carotene

0.0010

10

14

0

1

0

0

0

0

0

  1. Note: Some papers show that the biosynthesis can be enhanced by supplementing additional precursors. In the parenthesis, we had listed the number of enzyme steps from the added intermediates to final products.
  2. * Steps for ethylene was based on the arginine route.