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Table 3 Oligonucleotides used for cloning

From: Genetic response to metabolic fluctuations: correlation between central carbon metabolism and DNA replication in Escherichia coli

Primer name

Primer sequence (5'>3')

Tm °C

Restriction enzyme site

ackaF

GGCCCGGG ATGTCGAGTAAGTTAG

58.0

SmaI

ackaR

TGGCAAGCTT ACATTCAGGCAGTCAGGCGGCTCG

60.0

HindIII

gpmaF

CCGGGTACC ATGGCTGTAACTAAGCTGGTTCTG

66.9

KpnI

gpmaR

CGCGGTCGAC TTACTTCGCTTTACCCTGG

65.7

SalI

fbabF

TCCGGTACC ATGACAGATATTGCGCAGTTGCTTG

65.6

KpnI

fbabR

GGCCGTCGAC TCAGGCGATAGTAATTTTGC

64.4

SalI

pgiF

GCCCGGG ATGAAAAACATCAATCCAACGCAGACC

66.8

SmaI

pgiR

CGGAAGCTT TGATTAACCGCGCCACGCTTTATAG

65.6

HindIII

ptaF

CGGAGGAGGTACC ATGTCCCGTATTATTATG

63.0

KpnI

ptaR

GACGAAGCTT AGATTACTGCTGCTGTGCAGAC

64.4

HindIII

tktbF

CGGAGGGTACC ATGTCCCGAAAAGACCTTG

54.0

KpnI

tktbR

GCGCAAGCTT TCAGGCACCTTTCACTCCC

57.0

HindIII

acebF

GAGCGGTACC ATGACTGAACAGGCAACAACAAC

58.0

KpnI

acebR

TGTGTCGAC TTACGCTAACAGGCGGTAGCCTGG

58.0

SalI

  1. Sequences of particular oligonucleotides recognized by restriction enzymes listed in corresponding row are underlined.