Skip to main content

Table 1 E. coli strains used in this work

From: Genetic response to metabolic fluctuations: correlation between central carbon metabolism and DNA replication in Escherichia coli

Strain

Relevant characteristics

Reference or source

JJC809 (PC8)

dnaB8(ts) CmR F2 leuB6 thyA47 deoC3 rps153 l2

[21]

PC2

dnaC( ts) thy leu rpsL

[21]

PC3

dnaG(ts) Hfr leu thy rpsL

[22]

MG1655

F- λ- ilvG- rfb-50 rph-1

[23]

MG1655dnaA 46

F- λ- ilvG- rfb-50 rph-1 dnaA 46 tna::Tn10

[24]

DH5α

F- φ80lacZΔ M15 Δ(lac ZYA-argF)U169 deoR recA1 endA1 hsdR17(rk-, mk+) phoA supE44 thi-1 gyr A96 rel A1 λ-

[25]

BW25113

Δ(araD-araB)567, ΔlacZ4787::rrnB-3, λ-, rph-1, Δ(rhaD-rhaB)568, hsdR514

[26]

JW1122

Same as BW25113 but Δicd::kan

[27]

JW1413

Same as BW25113 but ΔgapC::kan

[27]

JW1666

Same as BW25113 but ΔpykF::kan

[27]

JW1841

Same as BW25113 but Δzwf::kan

[27]

JW2449

Same as BW25113 but ΔtktB::kan

[27]

JW3366

Same as BW25113 but Δpck::kan

[27]

JW3890

Same as BW25113 but ΔtpiA::kan

[27]

JW3974

Same as BW25113 but ΔaceB::kan

[27]

JW3985

Same as BW25113 but Δpgi::kan

[27]

JW2294

Same as BW25113 but Δpta::kan

[27]

JW2293

Same as BW25113 but ΔackA::kan

[27]

JW5173

Same as BW25113 but ΔicdC::kan

[27]

JW5344

Same as BW25113 but ΔfbaB::kan

[27]

JW0738

Same as BW25113 but ΔgpmA::kan

[27]

NR13339

Same as KA796 with dnaN159( Ts) zid501:: Tn10

[28]

NR7651

Same as MC4100 lacZ 104 dnaE486( Ts) zae502:: Tn10

[28]

AS701

MG1655 dnaA46 Δacn::kan

This study, by P1 transduction from JW0114

AS702

MG1655 dnaA46 Δicd::kan

This study, by P1 transduction from JW1122

AS703

MG1655 dnaA46 ΔgapC::kan

This study, by P1 transduction from JW1413

AS704

MG1655 dnaA46 ΔpykF::kan

This study, by P1 transduction from JW1666

AS705

MG1655 dnaA46 Δzwf::Kan

This study, by P1 transduction from JW1841

AS706

MG1655 dnaA46ΔtktB::kan

This study, by P1 transduction from JW2449

AS707

MG1655 dnaA46 Δpck::Kan

This study, by P1 transduction from JW3366

AS708

MG1655 dnaA46 ΔtpiA::Kan

This study, by P1 transduction from JW3890

AS709

MG1655 dnaA46 ΔaceB:Kan

This study, by P1 transduction from JW3974

AS710

MG1655 dna A46 Δpgi::kan

This study, by P1 transduction from JW3985

AS711

MG1655 dna A46 Δpta::kan

This study, by P1 transduction from JW2294

AS712

MG1655 dnaA46 ΔackA::kan

This study, by P1 transduction from JW2293

AS713

MG1655 dnaA46 ΔicdC::kan

This study, by P1 transduction from JW5173

AS714

MG1655 dnaA46ΔfbaB::kan

This study, by P1 transduction from JW5344

AS715

MG1655 dnaA46 ΔgpmA::kan

This study, by P1 transdukcion from JW0738

AS766

MG1655 dnaB8 Δacn::kan

This study, by P1 transduction from JW0114

AS767

MG1655 dnaB8 Δicd::kan

This study, by P1 transduction from JW1122

AS768

MG1655 dnaB8 ΔgapC::kan

This study, by P1 transduction from JW1413

AS769

MG1655 dnaB8 ΔpykF::kan

This study, by P1 transduction from JW1666

AS770

MG1655 dnaB8 Δzwf::kan

This study, by P1 transduction from JW1841

AS771

MG1655 dnaB8 ΔtktB::kan

This study, by P1 transduction from JW1841

AS772

MG1655 dnaB8 Δpck::kan

This study, by P1 transduction from JW3366

AS773

MG1655 dnaB8 ΔtpiA::kan

This study, by P1 transduction from JW3890

AS774

MG1655 dnaB8 ΔaceB::kan

This study, by P1 transduction from JW3974

AS775

MG1655 dnaB8 Δpgi::kan

This study, by P1 transduction from JW3985

AS776

MG1655 dnaB8 Δpta::kan

This study, by P1 transduction from JW2294

AS778

MG1655 dnaB8 ΔackA::kan

This study, by P1 transduction from JW2293

AS779

MG1655 dnaB8 ΔicdC::kan

This study, by P1 transduction from JW5173

AS780

MG1655 dnaB8 ΔfbaB::kan

This study, by P1 transduction from JW5344

AS781

MG1655 dnaB8 ΔgpmA::kan

This study, by P1 transduction from JW0738

AS750

PC2 dnaC(ts) Δacn::kan

This study, by P1 transduction from JW0114

AS751

PC2 dnaC(ts) Δicd::kan

This study, by P1 transduction from JW1122

AS752

PC2 dnaC(ts) ΔgapC::kan

This study, by P1 transduction from JW1413

AS753

PC2 dnaC(ts) ΔpykF::kan

This study, by P1 transduction from JW1666

AS754

PC2 dnaC(ts) Δzwf::kan

This study, by P1 transduction from JW1841

AS755

PC2 dnaC(ts) ΔtktB::kan

This study, by P1 transduction from JW2449

AS756

PC2 dnaC(ts) Δpck::kan

This study, by P1 transduction from JW3366

AS757

PC2 dnaC(ts) ΔtpiA::kan

This study, by P1 transduction from JW3890

AS758

PC2 dnaC(ts) ΔaceB::kan

This study, by P1 transduction from JW3974

AS759

PC2 dnaC(ts) Δpgi::kan

This study, by P1 transduction from JW3985

AS760

PC2 dnaC(ts) Δpta::kan

This study, by P1 transduction from JW2294

AS761

PC2 dnaC(ts) ΔackA::kan

This study, by P1 transduction from JW2293

AS762

PC2 dnaC(ts) ΔicdC::kan

This study, by P1 transduction from JW5173

AS763

PC2 dnaC(ts) ΔfbaB::kan

This study, by P1 transduction from JW5344

AS764

PC2 dnaC(ts) ΔgpmA::kan

This study, by P1 transduction from JW0738

AS783

PC3 dnaG(ts) Δacn::kan

This study, by P1 transduction from JW0114

AS784

PC3 dnaG(ts) Δicd::kan

This study, by P1 transduction from JW1122

AS785

PC3 dnaG(ts) ΔgapC::kan

This study, by P1 transduction from JW1413

AS786

PC3 dnaG(ts) ΔpykF::kan

This study, by P1 transduction from JW1666

AS787

PC3 dnaG(ts) Δzwf::kan

This study, by P1 transduction from JW1841

AS788

PC3 dnaG(ts) ΔtktB::kan

This study, by P1 transduction from JW2449

AS789

PC3 dnaG(ts) Δpck::kan

This study, by P1 transduction from JW3366

AS790

PC3 dnaG(ts) ΔtpiA::kan

This study, by P1 transduction from JW3890

AS791

PC3 dnaG(ts) ΔaceB::kan

This study, by P1 transduction from JW3974

AS792

PC3 dnaG(ts) Δpgi::kan

This study, by P1 transduction from JW3985

AS793

PC3 dnaG(ts) Δpta::kan

This study, by P1 transduction from JW2294

AS794

PC3 dnaG(ts) ΔackA::kan

This study, by P1 transduction from JW2293

AS795

PC3 dnaG(ts) ΔicdC::kan

This study, by P1 transduction from JW7173

AS796

PC3 dnaG(ts) ΔfbaB::kan

This study, by P1 transduction from JW5344

AS797

PC3 dnaG(ts) ΔgpmA::kan

This study, by P1 transduction from JW0738

AS718

MG1655 dnaE486 Δacn

This study, by P1 transduction from JW0114

AS719

MG1655 dnaE486 Δicd

This study, by P1 transduction from JW1122

AS720

MG1655 dnaE486 ΔgapC

This study, by P1 transduction from JW1413

AS721

MG1655 dnaE486 ΔpykF

This study, by P1 transduction from JW1666

AS722

MG1655 dnaE486 Δzwf

This study, by P1 transduction from JW1841

AS723

MG1655 dnaE486 ΔtktB

This study, by P1 transduction from JW2449

AS724

MG1655 dnaE486 Δpck

This study, by P1 transduction from JW3366

AS725

MG1655 dnaE486 ΔtpiA

This study, by P1 transduction from JW3890

AS726

MG1655 dnaE486 ΔaceB

This study, by P1 transduction from JW3974

AS728

MG1655 dnaE486 Δpgi

This study, by P1 transduction from JW3985

AS729

MG1655 dnaE486 Δpta

This study, by P1 transduction from JW2294

AS730

MG1655 dnaE486 ΔackA

This study, by P1 transduction from JW2293

AS731

MG1655 dnaE486 ΔicdC

This study, by P1 transduction from JW5173

AS732

MG1655 dnaE486 ΔfbaB

This study, by P1 transduction from JW5344

AS733

MG1655 dnaE486 ΔgpmA

This study, by P1 transduction from JW0738

AS734

MG1655 dnaN159 ΔacnB::kan

This study, by P1 transduction from JW0114

AS735

MG1655 dnaN159 Δicd::kan

This study, by P1 transduction from JW1122

AS736

MG1655 dnaN159 ΔgapC::kan

This study, by P1 transduction from JW1413

AS737

MG1655 dnaN159 ΔpykF::kan

This study, by P1 transduction from JW1666

AS738

MG1655 dnaN159 Δzwf::kan

This study, by P1 transduction from JW1841

AS739

MG1655 dnaN159 ΔtktB::kan

This study, by P1 transduction from JW2449

AS740

MG1655 dnaN159 Δpck::kan

This study, by P1 transduction from JW3366

AS741

MG1655 dnaN159 ΔtpiA::kan

This study, by P1 transduction from JW3890

AS742

MG1655 dnaN159 ΔaceB::kan

This study, by P1 transduction from JW3974

AS743

MG1655 dnaN159 Δpgi::kan

This study, by P1 transduction from JW3985

AS744

MG1655 dnaN159 Δpta::kan

This study, by P1 transduction from JW2294

AS745

MG1655 dnaN159 ΔackA::kan

This study, by P1 transduction from JW2293

AS746

MG1655 dnaN159 ΔicdC::kan

This study, by P1 transduction from JW5173

AS747

MG1655 dnaN159 ΔfbaB::kan

This study, by P1 transduction from JW5344

AS748

MG1655 dnaN159 ΔgpmA::kan

This study, by P1 transduction from JW0738

AS700

MG1655 dnaN159 zid501:: Tn10

This study, by P1 transduction from NR13339

AS717

MG1655 dnaE486 zae502:: Tn10

This study, by P1 transduction from NR7651

AS765

MG1655 dnaB8(ts) cmR

This study, by P1 transduction from JJC809