Actinoplanes teichomyceticus ATCC 31121 as a cell factory for producing teicoplanin
© Taurino et al; licensee BioMed Central Ltd. 2011
Received: 24 June 2011
Accepted: 18 October 2011
Published: 18 October 2011
Teicoplanin is a glycopeptide antibiotic used clinically in Europe and in Japan for the treatment of multi-resistant Gram-positive infections. It is produced by fermenting Actinoplanes teichomyceticus. The pharmaceutically active principle is teicoplanin A2, a complex of compounds designated T-A2-1-A2-5 differing in the length and branching of the fatty acid moiety linked to the glucosamine residue on the heptapeptide scaffold. According to European and Japanese Pharmacopoeia, components of the drug must be reproduced in fixed amounts to be authorized for clinical use.
We report our studies on optimizing the fermentation process to produce teicoplanin A2 in A. teichomyceticus ATCC 31121. Robustness of the process was assessed on scales from a miniaturized deep-well microtiter system to flasks and 3-L bioreactor fermenters. The production of individual factors T-A2-1-A2-5 was modulated by adding suitable precursors to the cultivation medium. Specific production of T-A2-1, characterized by a linear C10:1 acyl moiety, is enhanced by adding methyl linoleate, trilinoleate, and crude oils such as corn and cottonseed oils. Accumulation of T-A2-3, characterized by a linear C10:0 acyl chain, is stimulated by adding methyl oleate, trioleate, and oils such as olive and lard oils. Percentages of T-A2-2, T-A2-4, and, T-A2-5 bearing the iso-C10:0, anteiso-C11:0, and iso-C11:0 acyl moieties, respectively, are significantly increased by adding precursor amino acids L-valine, L-isoleucine, and L-leucine. Along with the stimulatory effect on specific complex components, fatty acid esters, oils, and amino acids (with the exception of L-valine) inhibit total antibiotic productivity overall. By adding industrial oils to medium containing L-valine the total production is comparable, giving unusual complex compositions.
Since the cost and the quality of teicoplanin production depend mainly on the fermentation process, we developed a robust and scalable fermentation process by using an industrial medium in which a complex composition can be modulated by the combined addition of suitable precursors. This work was performed in the wild-type strain ATCC 31121, which has a clear genetic background. This is important for starting a rational improvement program and also helps to better control teicoplanin production during process and strain development.
Although vancomycin and teicoplanin have been completely synthesized, the complexity of these natural products renders fermentation the only viable route for producing them pharmaceutically. Teicoplanin is produced by fermenting A. teichomyceticus ATCC 31121, as a complex of structurally related molecules differing in the length and branching of the fatty acid moiety linked to the glucosamine residue on the heptapeptide scaffold . The common core of teicoplanin (Figure 1A) consists of seven aromatic amino acids, which, apart from the tyrosine residue at position 2, are nonproteinogenic amino acids: three p-hydroxyphenylglycine residues at positions 1, 4, and 5; two dihdroxyphenylglycine at positions 3 and 7; and one β-hydroxytyrosine at position 6. Three ether bonds link amino acids at positions 1-3, 2-4, and 4-6, and one C-C link between amino acids 5-7 joins aryl groups. The tyrosine and the β-hydroxytyrosine residues at positions 2 and 6 contain a chlorine atom. Three sugar moieties are attached to the aryl groups: a α-D-mannose at amino acid 7, a N-acetyl-β-D-glucosamine at amino acid 6, and a N-fatty acyl-β-D-glucosamine at position 4. Enzymes involved in synthesizing the precursor aromatic nonproteinogenic amino acids, assembling them in the heptapetide precursor, and cross-linking, halogenating, and adding sugars to them are encoded by genes clustered on the A. teichomyceticus chromosome [5, 6]. The acyl chains linked to glucosamine at position 4 are linear or branched nine-, ten-, eleven-, twelve-carbon acids thought to be derived from ß-oxidation of longer fatty acids contained in the membrane pool of A. teichomyceticus.
The pharmaceutically active principle produced by fermentation is teicoplanin A2 (T-A2), a complex of five related compounds designated teicoplanin A2-1-A2-5, characterized by five different linear or branched ten- or eleven-carbon fatty acids (Figure 1A), which accounts for 89 to 95% of the total teicoplanin complex. A sixth, more polar active component, teicoplanin A3, which is not found in fermentation broth, is always present in crude or purified extracts; it is a hydrolytic product of T-A2. Especially according to the European Pharmacopoeia, which is much more restrictive than the Japanese guidelines , the six subcomponents should be present in the active pharmaceutical ingredient in rigorously fixed proportions. Although it is unlikely that small variations in the composition of active fractions significantly affect the biological activity and/or safety and efficacy of the drug in vivo, nowadays the responsible authorities do not permit the Pharmacopoeia specifications of complex composition to be different from the one registered for the innovator drug Targocid (Figure 1B).
Since the cost and the quality of teicoplanin depend mainly on the fermentation process, we investigated whether Actinoplanes teichomyceticus ATCC 31121 could be used as a cell factory for producing the drug. Particular attention was given to modulating the complex composition by adding fatty acid precursors or their amino acid precursors to the fermentation process, due to the importance for the aforementioned manufacturing guidelines.
Single-factor optimization of teicoplanin production medium
Four complex industrial media previously described in the original patent and in the more recent literature on producing teicoplanin by Actinoplanes teichomyceticus were used to assay T-A2 production in the ATCC 31121 strain: E1 , TE/20 , Medium 1 , and Medium 2  were selected since they differ mainly in carbon and nitrogen sources and salt content. Briefly, A. teichomyceticus grew well in these media (protocols to prepare reproducible cultures are described in the Methods) but produced only from 0 to 25 mg/L T-A2. The highest productivity was obtained in TE/20 (containing glucose at 20 g/L and maltose at 20 g/L as carbon sources, cottonseed meal at 15 g/L, and yeast extract at 6 g/L as nitrogen sources, and CaCO3 at 6 g/L as the only added salt), which was then selected as our starting point for further optimization by quantitatively/qualitatively changing its components in single-factor experiments.
In TM1 flask fermentation, onset of growth was observed after a lag phase of about 20 hours, which coincided with a slight increase in medium pH. A rapid decrease in free glucose concentration preceded the start of T-A2 production, which ensued at ca. 48 hours after inoculation and reached its maximum at 120-144 hours (Figure 3A). Under these conditions, the T-A2 complex showed the subcomponent composition reported in Figure 3B.
Fermentation from a miniaturized system to bioreactor scale
A. teichomyceticus growth and T-A2 production were tested in commercially available, square, deep-well polypropylene microtiter plates (24-SDW MTPs) with sandwich covers (System Duetz ), consisting of 24 wells filled with 2.5 mL production medium each. We thought that deep-well plates could considerably reduce the work load and cost of the investigation while optimizing the medium and improving the strain. For growing filamentous microorganisms to produce antibiotics in industrially and not completely soluble rich media, the use of such miniaturized systems is often limited by insufficient aeration and poor mixing [13–15].
Notwithstanding this dependence on oxygen rate, T-A2 production was well reproducible in 24-SDW MTPs: the average productivity in the 24 wells at 120-144 hours was 100 mg/L (σ = ± 10 mg/L), which compared favorably with data obtained in flasks. The HPLC profile of T-A2 complex composition in 24-SDW MTPs overlapped with the one shown in Figure 3B. This good performance of the miniaturized System Duetz is likely due to the favorable volume (2.5 mL working volume in 12.5 mL total well volume), geometry (square-instead of classical round-bottom wells), and special covers, which allowed agitation on a rotatory shaker and avoided evaporation and cross-contamination [13–15].
The robustness of the teicoplanin fermentation process was also confirmed by scaling it up to fermenters. Figure 4 shows a typical time course of A. teichomyceticus fermentation in TM1 at a 3-L fermenter scale, where pO2 was maintained over 20% of saturation (see also Figure S2, Additional file 1). Growth curve monitored by dry weight indicate that A. teichomyceticus exponentially grew up to 48 hours after inoculation, then growth rate tended to diminished, and after 120 hours from the inoculation a secondary exponential growth phase is observed as previously shown by other authors . Glucose consumption was completed in the first 48 hours and preceded T-A2 production, which reached its maximum at 96-120 hours after inoculation (volumetric productivity of 234 mg/L of culture with σ = ± 16 mg/L, specific productivity of 1.3 mg/g of biomass). pH tended to increase slowly after the first 24 hours of fermentation from 6, reaching 8 during the last phase of the process. Fermentations run by controlling pH at 7 by adding acid after 24-48 hours of growth did not improve T-A2 production (Figure S3, Additional file 1) and thus we did not introduce pH control in our reference fermentations. The HPLC profile of T-A2 composition at 120 hours of fermentation described in Figure 4 overlaps with that shown in Figure 3B.
Modulation of teicoplanin complex composition
Effect of biosynthesis precursors on teicoplanin production.
Effect of crude oils on teicoplanin production.
(80% L. - 11% O.)
(60% L. - 25% O.)
(58% L. - 14% O.)
(54% L. - 24% O.)
(38% L. - 53% O.)
(8% L. - 78% O.)
(20% L. - 75% O.)
(23% L. - 60% O.)
(10% L. - 46% O.)
Factors T-A2-2, T-A2-4, and T-A2-5 are characterized by branched fatty acids: 8-methylnonanoic (iso-C10:0), 8-methyldecanoic (anteiso-C11:0), and 9-methyldecanoic (iso-C11:0) acid, respectively (Figure 1). Their precursors were identified as the cell membrane fatty acids 14-methyl pentadecanoic (iso-C16:0), 14-methylesadecanoic (anteiso-C17:0), and 13-methyltetradecanoic (iso-15:0) acid, whose biosynthesis was significantly enhanced by adding amino acids L-valine, L-isoleucine, and L-leucine to the medium [7, 18–20]. Isobutyrate, isovalerate, and 2 methylbutyrate represent the starting molecules for synthesizing even-carbon iso acids, odd-carbon iso acids, and odd-carbon anteiso acids, but they could not be directly added to A. teichomyceticus cultures owing to their toxicity; thus they were indirectly supplied by adding the precursor amino acids, as shown in Table 1. L-valine increased the production of T-A2-2 to 70-80% of the T-A2 complex, whereas L-isoleucine or L-leucine increased the relative yields of T-A2-4 to more than 30% or T-A2-5 to more than 20%, respectively. Increasing concentrations of L-leucine and L-isoleucine progressively inhibited T-A2 complex composition, whereas the addition of L-valine caused a marked improvement (60-90% more) in total T-A2 productivity.
Optimized process at fermenter scale
Most of the papers published on teicoplanin production in the last decade [4, 11, 12, 16, 21, 22] report on efforts to optimize production of industrially valuable mutants, which are produced by applying the classical approach of random mutagenesis and selecting higher producer strains. Classical strain improvement (CSI) still represents the most successful means of meeting the industrial need for a rapid increase in the production yield of antibiotic-producing microbes. Indeed, it generates mutants with randomly uncontrolled, modified genome backgrounds . We recently initiated a program for improving the A. teichomyceticus strain based on rational metabolic engineering and recombinant DNA technology, which may provide a novel, alternative strategy for improving titers and that complements the empirical method used in industry. For this purpose we needed to establish a robust and reproducible process with the wild-type strain at different fermentation scales.
Firstly, we developed a complex industrial medium TM1 by single-factor experiments based on the composition of TE/20 medium published in the 1990's ; here, we changed the quality and quantity of the essential components such as carbon sources, nitrogen sources, and CaCO3. In this complex medium, inorganic phosphate, which is known to inhibit the synthesis of teicoplanin  and other teicoplanin-like glycopeptides [24, 25] when added to defined mineral media, is slowly released during soybean meal and yeast extract consumption, and its effect has not been further investigated. Since two atoms of chlorine are present in the teicoplanin molecule, we tested the effect of adding different concentrations of NaCl; however, no improvement was observed, suggesting the chlorine content of fermentation medium was already sufficient for producing T-A2. Exploiting TM1 medium, the optimal T-A2 titer was found to be around 100 mg/L, which is more than five- to ten-fold better than in the initially screened media. An important parameter to be assessed in teicoplanin production -- for the reasons stated in the background section -- is its complex composition, whose factors differ by the length and branching of the fatty acids chains. We were aware that nitrogen sources, and to a lesser extent carbon sources, such as the ones used in the TM1 formulation, contain variable compositions of amino acids and fatty acids. These constituents can supply a pool of precursors for diverse components of the T-A2 complex, changing its relative composition in comparison to the ones achieved in other media [7, 17].
Secondly, total T-A2 production and complex composition in TM1 were found to be reproducible in the miniaturized fermentation system previously described by Duetz . Thus, we were able to handle 24 mini-fermentations in parallel, significantly reducing the workload and the demand for shakers, flasks, media, and analytical equipment during fermentation and strain improvement programs. Previous investigations employing this miniaturized system mostly focused on bacteria with unicellular dispersion and on determining growth and primary metabolism. Only few studies have been published on secondary metabolite production in filamentous streptomycetes, i.e., actinorhodin  and novobiocin . To our knowledge, this is the first report on antibiotic production in such a miniaturized system by an Actinoplanes species, which belong to the so-called rare genera of filamentous actinomycetes .
Reproducible total T-A2 production and complex composition were also achieved when fermentation was scaled up to laboratory fermenters, where indeed an increase of up to more than 200 mg/L was obtained when DO was kept over 20%. These data confirmed previous observations from a patented high producer mutant at pilot (300 L) and plant (50, 000 L) scales, where it was demonstrated that teicoplanin production decreased significantly as DO was maintained below 20%, indicating that this parameter represents a major concern in scaling up the process .
Numerous experts believe that, in a clinical setting, teicoplanin should be treated as an entity, regardless of the relative levels of subcomponents, since their relative amounts, lipophilicity, and MICs do not predict significant differences in pharmacokinetic characteristics. Nevertheless, due to the Pharmacopoeia's specifications with respect to the individual glycopeptide subcomponents (as mentioned in the Background), tools to modulate teicoplanin complexes during manufacturing might be very useful.
To this end, we applied a biosynthetic approach to modulate T-A2, which was based on previous investigations of the origin of linear and branched-chain fatty acids constituting the acyl moieties in T-A2, in its structurally closely related A40926 lipoglycopeptide [18, 20, 27], and in the lipopeptide antibiotic ramoplanin . In these antibiotics acyl moieties derive from fatty acid constituents of membrane lipids or from those exogenously added to the growth medium [7, 17, 20, 27]. It was observed that changes in fatty acid composition of cell membranes in the producer actinomycetes caused by feeding precursor amino acids corresponded well to the fatty acid distribution within the produced teicoplanin, A40926, and ramoplanin complexes [7, 18–20, 27]. Previous studies [18, 20] showed that when a single-branched amino acid was added to a minimal medium in Nonomuraea sp., which produce the teicoplanin-like A40926, the biosynthesis of membrane fatty acids was influenced not only by the products of the initial steps of its catabolism, but also by the end products of the pathway, depending on the affinity of the starters for the fatty acid synthase. Nonomuraea sp.'s fatty acid synthetase preferred isobutyric acid, which is provided by the partial catabolism of L-valine present in the culture medium, whereas isovaleryl-CoA generated from L-leucine was only accepted as a substrate to a lesser extent, and 2-methylbutyryl-CoA from L-isoleucine was not recognized as a promoter. As a consequence of adding L-isoleucine, its complete catabolism provided propionic acid, which was extensively used by the fatty acid synthetase as primer of fatty acids with an odd number of carbons.
A similar interplay between the availability of the biosynthetic starters and the affinity of the starters for the synthase could affect the changes in the membrane composition of A. teichomyceticus and consequently the composition of the teicoplanin that is produced. As in the case of A40926 production in Nonomuraea sp., L-valine addition improved teicoplanin-specific productivity, suggesting that biosynthesis of the corresponding fatty acid represents a limiting step, which can be overcome by adding the appropriate precursor. The fact that other precursor amino acids and oils stimulated relative production of the corresponding complex components, but inhibited total antibiotic production likely reflects the extent of the membrane perturbation caused by adding massive amounts. In fact, in the cases of both Nonomuraea sp. and A. teichomyceticus, the major component among the membrane fatty acids, in the absence of added precursors, is the 14-methyl pentadecanoic (iso-C16:0) fatty acid, which originates from L-valine [7, 19, 20, 27]. According to our hypothesis, the increase upon adding L-valine causes a less perturbing effect on membrane composition than adding L-leucine and L-isoleucine, which substantially increases minor fatty acid membrane components, or oils containing long chain fatty acids that can alter membrane properties . Restoration of control productivity in the case of combined addition of L-valine and crude oils indirectly confirms the need to maintain a membrane-equilibrated composition.
These findings should stimulate further work to optimize times for adding L-valine and crude oils to the fermentation process of A. teichomyceticus, in order to obtain unusual complex compositions without affecting membrane stability in the early phase of growth. Preliminary data show that the inhibitory effect of crude oils on total teicoplanin production is lower if they are added when the growth rate tends to be decreasing and the cells are entering into the stationary phase of growth. Taking into account the good performance achieved at the fermenter level in TM1 to which L-valine was added (T-A2 volumetric productivity more than 300 mg/L), further experiments will be run in oil-fed batch fermentations.
Most of the cost and quality of teicoplanin depends on fermentation conditions, which typically change when scaling up to an industrial process using valuable high producer strains. We have developed a robust fermentation process by using an industrial medium, which can be scaled down and up and in which complex composition can be modulated by the combined addition of suitable precursors such as amino acids and crude oils. This work was carried out in the wild-type strain ATCC 31121, which has a clear genetic background. This is important for starting a rational improvement program and also helps to better control teicoplanin production during process and strain development.
A. teichomyceticus ATCC 31121 was maintained as a frozen vegetative stock at -80°C in 15% v/v glycerol at a biomass concentration of approximately 0.08 g/mL DW (dry weight). This working cell bank (WCB) was prepared by streaking lyophilized mycelium on slants of SM agar medium . After growth, the mycelium from the slant was homogenized in 10 mL of physiological solution (0.9% w/v NaCl) and inoculated into 50 mL liquid E25  in a 300-mL baffled Erlenmeyer flask. Flasks were incubated for 72 hours at 28°C and 220 rpm. Mycelium was collected by centrifugation, washed by water, weighted, resuspended in 15% v/v glycerol and stored as a WCB in 1.5 mL cryo-vials at -80°C.
To start the fermentation process, one vial of the WCB was inoculated into 300-mL baffled flasks containing 50 mL of vegetative medium E25. Flask cultures were incubated for 72 hours on a rotary shaker at 220 rpm and 28°C and then used to inoculate (5% v/v): (i) 24-Square Deep Well polypropylene microtiter plates (24-SDW MTPs) purchased from EnzyScreen BV (Biopartner center, Leiden, The Netherlands) containing 2.5 mL production medium; (ii) 300-mL baffled Erlenmeyer flasks containing 50 mL production medium, or (iii) 3 L P-100 Applikon glass reactor (height 25 cm, diameter 13 cm) equipped with a AD1030 Biocontroller and AD1032 motor, containing 2 L production medium. Microtiter plates and flasks were incubated at 28°C and 220 rpm for 144-168 hours. Cultivations in fermenters were carried out for 144-168 hours at 30°C, with stirring at 500-900 rpm (corresponding to 1.17-2.10 m/s of tip speed) and 2 L/min aeration rate. Dissolved oxygen (measured as % pO2) was monitored using an Ingold polarographic oxygen electrode and controlled by setting agitation speed in cascade with a set point of 20% of saturation with pO2. The pH values of culture broths were monitored using a pH meter and controlled by adding H2SO4 (2, 5% v/v). Foam production was controlled by adding Hodag antifoam through an antifoam sensor. Fermentation runs were replicated at least three times for each experimental condition. Data were calculated as mean values from three replicated fermentations.
E1 , TE/20 , Medium 1 , and Medium 2  were tested as production medium. Components of TE/20 medium (carbon sources, nitrogen sources, and CaCO3) were examined individually to determine their contribution toward the production of T-A2 in A. teichomyceticus ATCC 31121 (single-factor experiments).
Different concentrations of L-valine, L-isoleucine, L-leucine, methyl linoleate, methyl oleate, trilinoleate, trioleate, almond oil, canola oil, corn oil, cottonseed oil, lard oil, safflower oil, sesame oil, and soybean oil, previously sterilized in an autoclave were added at the time of inoculation to determine their effect on teicoplanin production. All the amino acids and the oils used were purchased from Sigma-Aldrich (St. Louis, MO, USA).
Fermentation broth samples were collected at regular time intervals and analyzed. Teicoplanin was extracted by mixing 1 volume of whole culture and 1 volume of borate buffer (100 mM H3BO3 (Sigma-Aldrich), 100 mM NaOH (Sigma-Aldrich), pH 12). Mixtures were then centrifuged (16, 000 x g for 15 min). The supernatant was collected and filtered through a Durapore membrane filter (0.45 μm) (Millipore, Billerica, MA, USA).
The glycopeptide production was estimated by HPLC performed on a 5-μm particle size Symmetry C18 (VWR International LCC, Radnor, PA, USA) column (4.6 × 250 mm) eluted at 1 mL/min flow rate with a 30-minute linear gradient from 15% to 65% of Phase B, followed by 10 minutes with 100% Phase B. Phase A was 32 mM HCOONH4 (Sigma-Aldrich) pH 4.5:CH3CN (Sigma-Aldrich) 90:10 (v/v) and Phase B was 32 mM HCOONH4 pH 4.5:CH3CN 30:70 (v/v) mixture. The chromatography was performed with a model 1100 HPLC system (Elite Lachrom VWR Hitachi LLC) and UV detection was at 236 nm. As internal standard, pure samples of teicoplanin (Targocid, Sanofi-Aventis) were used. Three HPLC analyses were repeated on the same sample and data were calculated as mean values of three replicated analyses.
C (std) = concentration (mg/L) of the standard
A = area sum of the peaks T-A2-1, T-A2-2 , T-A2-3, T-A2-4, T-A2-5 in the sample
A (std) = area sum of the peaks T-A2-1, T-A2-2 , T-A2-3, T-A2-4, T-A2-5 in the standard
2 = dilution factor
An = area of single peak T-A2-n in the sample where n = 1, 2, 3, 4, 5
A = area sum of the peaks T-A2-1, T-A2-2 , T-A2-3, T-A2-4, T-A2-5 in the sample
To estimate growth, mycelium was collected by centrifugation (3, 250 x g for 20 min) and washed with 2 mL isotonic saline. Dry weight was measured after 24-hour incubation in a 50°C oven. Alternatively, 10 mL of culture were collected and centrifuged to determine PMV. Glucose was analyzed using the Trinder assay (Sigma Diagnostics, St. Louis, MO, USA).
The authors acknowledge Farmhispania S.A and Rolabo Outsourcing S.L. for funding this work. Special thanks are due to Gustavo Butelman for his trust and support over the years. This work was also supported by grants from Fondo di Ateneo per la Ricerca to FM and by MIUR fellowship to GLM and LF. We appreciate the support from Consorzio Interuniversitario per le Biotecnologie (CIB) and Centro di Ricerca in Biotecnologie per la Salute Umana (BSU). Part of the data were generated during thesis stage by Chiara Borsetto, whose contribution is sincerely acknowledged.
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